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1G3N
Biol. Unit 2
Info
Asym.Unit (221 KB)
Biol.Unit 1 (109 KB)
Biol.Unit 2 (109 KB)
Biol.Unit 3 (168 KB)
Biol.Unit 4 (143 KB)
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(1)
Title
:
STRUCTURE OF A P18(INK4C)-CDK6-K-CYCLIN TERNARY COMPLEX
Authors
:
P. D. Jeffrey, L. Tong, N. P. Pavletich
Date
:
24 Oct 00 (Deposition) - 10 Jan 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,E,F,G
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: E,F,G (1x)
Biol. Unit 3: A,C,E,G (1x)
Biol. Unit 4: A,B,E,F (1x)
Keywords
:
Cyclin-Dependent Kinase, Ink4 Inhibitor, Viral Cyclin, Cell Cycle, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. D. Jeffrey, L. Tong, N. P. Pavletich
Structural Basis Of Inhibition Of Cdk-Cyclin Complexes By Ink4 Inhibitors.
Genes Dev. V. 14 3115 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_001490 (A72P, chain F, )
2: VAR_041978 (D110N, chain E, )
3: VAR_038604 (T126M, chain F, )
4: VAR_072638 (A197T, chain E, )
5: VAR_041979 (P199L, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_001490
A
72
P
CDN2C_HUMAN
Unclassified
---
F
A
72
P
2
UniProt
VAR_041978
D
110
N
CDK6_HUMAN
Polymorphism
35654944
E
D
110
N
3
UniProt
VAR_038604
T
126
M
CDN2C_HUMAN
Polymorphism
17851380
F
T
126
M
4
UniProt
VAR_072638
A
197
T
CDK6_HUMAN
Disease (MCPH12)
---
E
A
197
T
5
UniProt
VAR_041979
P
199
L
CDK6_HUMAN
Unclassified
---
E
P
199
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 5)
Info
All PROSITE Patterns/Profiles
1: ANK_REP_REGION (F:9-160)
2: PROTEIN_KINASE_ATP (E:19-43)
3: ANK_REPEAT (F:102-128)
4: PROTEIN_KINASE_ST (E:141-153)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANK_REP_REGION
PS50297
Ankyrin repeat region circular profile.
CDN2C_HUMAN
9-161
1
-
F:9-160
2
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CDK6_HUMAN
19-43
1
-
E:19-43
3
ANK_REPEAT
PS50088
Ankyrin repeat profile.
CDN2C_HUMAN
69-101
102-128
2
-
F:69-101
-
F:102-128
4
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CDK6_HUMAN
141-153
1
-
E:141-153
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 8)
Info
All SCOP Domains
1a: SCOP_d1g3nc1 (C:16-147)
1b: SCOP_d1g3nc2 (C:148-253)
1c: SCOP_d1g3ng1 (G:16-147)
1d: SCOP_d1g3ng2 (G:148-253)
2a: SCOP_d1g3nb_ (B:)
2b: SCOP_d1g3nf_ (F:)
3a: SCOP_d1g3na_ (A:)
3b: SCOP_d1g3ne_ (E:)
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)
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(
)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cyclin-like
(137)
Superfamily
:
Cyclin-like
(137)
Family
:
Cyclin
(117)
Protein domain
:
Viral cyclin
(7)
Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]
(1)
1a
d1g3nc1
C:16-147
1b
d1g3nc2
C:148-253
1c
d1g3ng1
G:16-147
1d
d1g3ng2
G:148-253
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-hairpin-alpha-hairpin repeat
(81)
Superfamily
:
Ankyrin repeat
(79)
Family
:
Ankyrin repeat
(60)
Protein domain
:
p18ink4C(ink6)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d1g3nb_
B:
2b
d1g3nf_
F:
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Cyclin-dependent PK, CDK6
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
3a
d1g3na_
A:
3b
d1g3ne_
E:
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CATH Domains
(4, 10)
Info
all CATH domains
1a: CATH_1g3nA01 (A:11-102)
1b: CATH_1g3nE01 (E:11-102)
2a: CATH_1g3nB00 (B:6-160)
2b: CATH_1g3nF00 (F:6-160)
3a: CATH_1g3nC01 (C:16-34,C:148-253)
3b: CATH_1g3nG01 (G:16-34,G:148-252)
3c: CATH_1g3nC02 (C:35-147)
3d: CATH_1g3nG02 (G:35-147)
4a: CATH_1g3nA02 (A:103-299)
4b: CATH_1g3nE02 (E:103-299)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
1g3nA01
A:11-102
1b
1g3nE01
E:11-102
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.20, no name defined]
(65)
Human (Homo sapiens)
(31)
2a
1g3nB00
B:6-160
2b
1g3nF00
F:6-160
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cyclin A; domain 1
(136)
Homologous Superfamily
:
[code=1.10.472.10, no name defined]
(99)
Human (Homo sapiens)
(84)
3a
1g3nC01
C:16-34,C:148-253
3b
1g3nG01
G:16-34,G:148-252
3c
1g3nC02
C:35-147
3d
1g3nG02
G:35-147
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
4a
1g3nA02
A:103-299
4b
1g3nE02
E:103-299
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (221 KB)
Header - Asym.Unit
Biol.Unit 1 (109 KB)
Header - Biol.Unit 1
Biol.Unit 2 (109 KB)
Header - Biol.Unit 2
Biol.Unit 3 (168 KB)
Header - Biol.Unit 3
Biol.Unit 4 (143 KB)
Header - Biol.Unit 4
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