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Getting 'Exon' information from database.
1G3N
Asym. Unit
Info
Asym.Unit (221 KB)
Biol.Unit 1 (109 KB)
Biol.Unit 2 (109 KB)
Biol.Unit 3 (168 KB)
Biol.Unit 4 (143 KB)
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(1)
Title
:
STRUCTURE OF A P18(INK4C)-CDK6-K-CYCLIN TERNARY COMPLEX
Authors
:
P. D. Jeffrey, L. Tong, N. P. Pavletich
Date
:
24 Oct 00 (Deposition) - 10 Jan 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,E,F,G
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: E,F,G (1x)
Biol. Unit 3: A,C,E,G (1x)
Biol. Unit 4: A,B,E,F (1x)
Keywords
:
Cyclin-Dependent Kinase, Ink4 Inhibitor, Viral Cyclin, Cell Cycle, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. D. Jeffrey, L. Tong, N. P. Pavletich
Structural Basis Of Inhibition Of Cdk-Cyclin Complexes By Ink4 Inhibitors.
Genes Dev. V. 14 3115 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_001490 (A72P, chain B/F, )
2: VAR_041978 (D110N, chain A/E, )
3: VAR_038604 (T126M, chain B/F, )
4: VAR_072638 (A197T, chain A/E, )
5: VAR_041979 (P199L, chain A/E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_001490
A
72
P
CDN2C_HUMAN
Unclassified
---
B/F
A
72
P
2
UniProt
VAR_041978
D
110
N
CDK6_HUMAN
Polymorphism
35654944
A/E
D
110
N
3
UniProt
VAR_038604
T
126
M
CDN2C_HUMAN
Polymorphism
17851380
B/F
T
126
M
4
UniProt
VAR_072638
A
197
T
CDK6_HUMAN
Disease (MCPH12)
---
A/E
A
197
T
5
UniProt
VAR_041979
P
199
L
CDK6_HUMAN
Unclassified
---
A/E
P
199
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(4, 10)
Info
All PROSITE Patterns/Profiles
1: ANK_REP_REGION (B:9-160,F:9-160)
2: PROTEIN_KINASE_ATP (A:19-43,E:19-43)
3: ANK_REPEAT (B:69-101,F:69-101|B:102-128,F:102-...)
4: PROTEIN_KINASE_ST (A:141-153,E:141-153)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANK_REP_REGION
PS50297
Ankyrin repeat region circular profile.
CDN2C_HUMAN
9-161
2
B:9-160
F:9-160
2
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CDK6_HUMAN
19-43
2
A:19-43
E:19-43
3
ANK_REPEAT
PS50088
Ankyrin repeat profile.
CDN2C_HUMAN
69-101
102-128
4
B:69-101
F:69-101
B:102-128
F:102-128
4
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CDK6_HUMAN
141-153
2
A:141-153
E:141-153
[
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]
Exons
(9, 18)
Info
All Exons
Exon 1.4b (A:9-78 | E:9-78)
Exon 1.5 (A:78-123 | E:78-123)
Exon 1.6a (A:124-179 | E:124-179)
Exon 1.7a (A:180-216 | E:180-216)
Exon 1.8 (A:216-233 | E:216-233)
Exon 1.9b (A:233-278 | E:233-278)
Exon 1.10c (A:279-301 | E:279-301)
Exon 2.3b (B:6-43 | F:6-43)
Exon 2.4b (B:44-160 | F:44-160)
View:
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All Exon Boundaries
01: Boundary 1.3/1.4b
02: Boundary 1.4b/1.5
03: Boundary 1.5/1.6a
04: Boundary 1.6a/1.7a
05: Boundary 1.7a/1.8
06: Boundary 1.8/1.9b
07: Boundary 1.9b/1.10c
08: Boundary 1.10c/-
09: Boundary 2.2b/2.3b
10: Boundary 2.3b/2.4b
11: Boundary 2.4b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000265734
3
ENSE00001337042
chr7:
92463231-92463187
45
CDK6_HUMAN
-
0
0
-
-
1.4b
ENST00000265734
4b
ENSE00001132651
chr7:
92463004-92462405
600
CDK6_HUMAN
1-78
78
2
A:9-78
E:9-78
70
70
1.5
ENST00000265734
5
ENSE00000877375
chr7:
92404145-92404010
136
CDK6_HUMAN
78-123
46
2
A:78-123
E:78-123
46
46
1.6a
ENST00000265734
6a
ENSE00000877376
chr7:
92355107-92354940
168
CDK6_HUMAN
124-179
56
2
A:124-179
E:124-179
56
56
1.7a
ENST00000265734
7a
ENSE00001764561
chr7:
92300849-92300740
110
CDK6_HUMAN
180-216
37
2
A:180-216
E:180-216
37
37
1.8
ENST00000265734
8
ENSE00000705202
chr7:
92252400-92252350
51
CDK6_HUMAN
216-233
18
2
A:216-233
E:216-233
18
18
1.9b
ENST00000265734
9b
ENSE00000705199
chr7:
92247521-92247386
136
CDK6_HUMAN
233-278
46
2
A:233-278
E:233-278
46
46
1.10c
ENST00000265734
10c
ENSE00001132644
chr7:
92244600-92234235
10366
CDK6_HUMAN
279-326
48
2
A:279-301
E:279-301
23
23
2.2b
ENST00000396148
2b
ENSE00001524054
chr1:
51434367-51435571
1205
CDN2C_HUMAN
-
0
0
-
-
2.3b
ENST00000396148
3b
ENSE00001064516
chr1:
51436030-51436169
140
CDN2C_HUMAN
1-43
43
2
B:6-43
F:6-43
38
38
2.4b
ENST00000396148
4b
ENSE00001064515
chr1:
51439565-51440305
741
CDN2C_HUMAN
44-168
125
2
B:44-160
F:44-160
117
117
[
close EXON info
]
SCOP Domains
(3, 8)
Info
All SCOP Domains
1a: SCOP_d1g3nc1 (C:16-147)
1b: SCOP_d1g3nc2 (C:148-253)
1c: SCOP_d1g3ng1 (G:16-147)
1d: SCOP_d1g3ng2 (G:148-253)
2a: SCOP_d1g3nb_ (B:)
2b: SCOP_d1g3nf_ (F:)
3a: SCOP_d1g3na_ (A:)
3b: SCOP_d1g3ne_ (E:)
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(
)
(
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(
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(
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(
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(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cyclin-like
(137)
Superfamily
:
Cyclin-like
(137)
Family
:
Cyclin
(117)
Protein domain
:
Viral cyclin
(7)
Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]
(1)
1a
d1g3nc1
C:16-147
1b
d1g3nc2
C:148-253
1c
d1g3ng1
G:16-147
1d
d1g3ng2
G:148-253
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-hairpin-alpha-hairpin repeat
(81)
Superfamily
:
Ankyrin repeat
(79)
Family
:
Ankyrin repeat
(60)
Protein domain
:
p18ink4C(ink6)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d1g3nb_
B:
2b
d1g3nf_
F:
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Cyclin-dependent PK, CDK6
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
3a
d1g3na_
A:
3b
d1g3ne_
E:
[
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]
CATH Domains
(4, 10)
Info
all CATH domains
1a: CATH_1g3nA01 (A:11-102)
1b: CATH_1g3nE01 (E:11-102)
2a: CATH_1g3nB00 (B:6-160)
2b: CATH_1g3nF00 (F:6-160)
3a: CATH_1g3nC01 (C:16-34,C:148-253)
3b: CATH_1g3nG01 (G:16-34,G:148-252)
3c: CATH_1g3nC02 (C:35-147)
3d: CATH_1g3nG02 (G:35-147)
4a: CATH_1g3nA02 (A:103-299)
4b: CATH_1g3nE02 (E:103-299)
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)
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(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
1g3nA01
A:11-102
1b
1g3nE01
E:11-102
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.20, no name defined]
(65)
Human (Homo sapiens)
(31)
2a
1g3nB00
B:6-160
2b
1g3nF00
F:6-160
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cyclin A; domain 1
(136)
Homologous Superfamily
:
[code=1.10.472.10, no name defined]
(99)
Human (Homo sapiens)
(84)
3a
1g3nC01
C:16-34,C:148-253
3b
1g3nG01
G:16-34,G:148-252
3c
1g3nC02
C:35-147
3d
1g3nG02
G:35-147
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
4a
1g3nA02
A:103-299
4b
1g3nE02
E:103-299
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (221 KB)
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