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1G1X
Asym. Unit
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Asym.Unit (157 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
STRUCTURE OF RIBOSOMAL PROTEINS S15, S6, S18, AND 16S RIBOSOMAL RNA
Authors
:
S. C. Agalarov, G. S. Prasad, P. M. Funke, C. D. Stout, J. R. Williamson
Date
:
13 Oct 00 (Deposition) - 30 Oct 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Ribosomal Proteins S15, S6, S18, S30 Ribosomal Subunit, Rna, Ribosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Agalarov, G. Sridhar Prasad, P. M. Funke, C. D. Stout, J. R. Williamson
Structure Of The S15, S6, S18-Rrna Complex: Assembly Of The 30S Ribosome Central Domain.
Science V. 288 107 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_S18 (C:32-53,H:32-53)
2: RIBOSOMAL_S15 (B:38-68,G:38-68)
3: RIBOSOMAL_S6 (A:44-53,F:44-53)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_S18
PS00057
Ribosomal protein S18 signature.
RS18_THET8
32-55
2
C:32-53
H:32-53
2
RIBOSOMAL_S15
PS00362
Ribosomal protein S15 signature.
RS15_THET8
39-69
2
B:38-68
G:38-68
3
RIBOSOMAL_S6
PS01048
Ribosomal protein S6 signature.
RS6_THET8
44-53
2
A:44-53
F:44-53
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1g1xc_ (C:)
1b: SCOP_d1g1xh_ (H:)
2a: SCOP_d1g1xb_ (B:)
2b: SCOP_d1g1xg_ (G:)
3a: SCOP_d1g1xa_ (A:)
3b: SCOP_d1g1xf_ (F:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Ribosomal protein S18
(71)
Family
:
Ribosomal protein S18
(71)
Protein domain
:
Ribosomal protein S18
(71)
Thermus thermophilus [TaxId: 274]
(47)
1a
d1g1xc_
C:
1b
d1g1xh_
H:
Fold
:
S15/NS1 RNA-binding domain
(66)
Superfamily
:
S15/NS1 RNA-binding domain
(66)
Family
:
Ribosomal protein S15
(53)
Protein domain
:
Ribosomal protein S15
(53)
Thermus thermophilus [TaxId: 274]
(42)
2a
d1g1xb_
B:
2b
d1g1xg_
G:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Ribosomal protein S6
(79)
Family
:
Ribosomal protein S6
(79)
Protein domain
:
Ribosomal protein S6
(79)
Thermus thermophilus [TaxId: 274]
(53)
3a
d1g1xa_
A:
3b
d1g1xf_
F:
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1g1xA00 (A:1-98)
1b: CATH_1g1xF00 (F:1-98)
2a: CATH_1g1xH00 (H:30-82)
2b: CATH_1g1xC00 (C:30-82)
3a: CATH_1g1xB00 (B:1-88)
3b: CATH_1g1xG00 (G:1-88)
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)
Organisms
(
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.60, no name defined]
(93)
[unclassified]
(2)
1a
1g1xA00
A:1-98
1b
1g1xF00
F:1-98
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
30s Ribosomal Protein S18
(102)
Homologous Superfamily
:
30s Ribosomal Protein S18
(102)
[unclassified]
(1)
2a
1g1xH00
H:30-82
2b
1g1xC00
C:30-82
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.10, no name defined]
(116)
[unclassified]
(2)
3a
1g1xB00
B:1-88
3b
1g1xG00
G:1-88
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Pfam Domains
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Asym.Unit (157 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (78 KB)
Header - Biol.Unit 2
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