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1FYH
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (80 KB)
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(1)
Title
:
1:1 COMPLEX BETWEEN AN INTERFERON GAMMA SINGLE-CHAIN VARIANT AND ITS RECEPTOR
Authors
:
M. Randal, A. A. Kossiakoff
Date
:
29 Sep 00 (Deposition) - 11 Oct 00 (Release) - 21 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Keywords
:
Cytokine-Receptor Complex, Fibronectin Type-Iii, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Randal, A. A. Kossiakoff
The Structure And Activity Of A Monomeric Interferon-Gamma:Alpha-Chain Receptor Signaling Complex.
Structure V. 9 155 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:83 , ASN A:85 , LYS A:88 , ASN D:83 , ASN D:85 , LYS D:88
BINDING SITE FOR RESIDUE CL A 501
[
close Site info
]
SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_004017 (K6Q, chain A/D, )
2: VAR_019281 (V44I, chain B/E, )
3: VAR_017577 (C60Y, chain B/E, )
4: VAR_017578 (I70T, chain B/E, )
5: VAR_004018 (K258Q, chain A/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_004017
K
29
Q
IFNG_HUMAN
Polymorphism
---
A/D
K
6
Q
2
UniProt
VAR_019281
V
61
I
INGR1_HUMAN
Polymorphism
17175322
B/E
V
44
I
3
UniProt
VAR_017577
C
77
Y
INGR1_HUMAN
Disease (IMD27A)
---
B/E
C
60
Y
4
UniProt
VAR_017578
I
87
T
INGR1_HUMAN
Disease (IMD27A)
---
B/E
I
70
T
5
UniProt
VAR_004018
R
160
Q
IFNG_HUMAN
Polymorphism
---
A/D
K
258
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
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Exons
(9, 18)
Info
All Exons
Exon 1.1 (A:0-15 | D:0-15)
Exon 1.2 (A:16-38 | D:16-38)
Exon 1.3 (A:39-99 | D:39-99)
Exon 1.4 (A:100-264 (gaps) | D:100-264 (gaps...)
Exon 2.1a (B:12-12 | E:12-12)
Exon 2.3a (B:12-50 | E:12-50)
Exon 2.4a (B:50-108 | E:50-108)
Exon 2.5b (B:108-165 (gaps) | E:108-165 (gaps...)
Exon 2.6b (B:166-223 | E:166-222)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/-
06: Boundary -/2.1a
07: Boundary 2.1a/2.3a
08: Boundary 2.3a/2.4a
09: Boundary 2.4a/2.5b
10: Boundary 2.5b/2.6b
11: Boundary 2.6b/2.7b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000229135
1
ENSE00001305632
chr12:
68553523-68553282
242
IFNG_HUMAN
1-38
38
2
A:0-15
D:0-15
16
16
1.2
ENST00000229135
2
ENSE00000751701
chr12:
68552039-68551971
69
IFNG_HUMAN
39-61
23
2
A:16-38
D:16-38
23
23
1.3
ENST00000229135
3
ENSE00000751702
chr12:
68551875-68551693
183
IFNG_HUMAN
62-122
61
2
A:39-99
D:39-99
61
61
1.4
ENST00000229135
4
ENSE00000871856
chr12:
68549267-68548549
719
IFNG_HUMAN
123-166
44
2
A:100-264 (gaps)
D:100-264 (gaps)
90
90
2.1a
ENST00000367739
1a
ENSE00002147702
chr6:
137540586-137540380
207
INGR1_HUMAN
1-29
29
2
B:12-12
E:12-12
1
1
2.3a
ENST00000367739
3a
ENSE00000764523
chr6:
137528214-137528100
115
INGR1_HUMAN
29-67
39
2
B:12-50
E:12-50
39
39
2.4a
ENST00000367739
4a
ENSE00000764522
chr6:
137527445-137527273
173
INGR1_HUMAN
67-125
59
2
B:50-108
E:50-108
59
59
2.5b
ENST00000367739
5b
ENSE00001719673
chr6:
137525641-137525469
173
INGR1_HUMAN
125-182
58
2
B:108-165 (gaps)
E:108-165 (gaps)
58
58
2.6b
ENST00000367739
6b
ENSE00002146269
chr6:
137524822-137524636
187
INGR1_HUMAN
183-245
63
2
B:166-223
E:166-222
58
57
2.7b
ENST00000367739
7b
ENSE00001707029
chr6:
137522145-137522018
128
INGR1_HUMAN
245-287
43
0
-
-
2.8
ENST00000367739
8
ENSE00001597426
chr6:
137519776-137518621
1156
INGR1_HUMAN
288-489
202
0
-
-
[
close EXON info
]
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1fyha1 (A:0-124)
1b: SCOP_d1fyha2 (A:201-324)
1c: SCOP_d1fyhd1 (D:0-124)
1d: SCOP_d1fyhd2 (D:201-324)
2a: SCOP_d1fyhb1 (B:12-109)
2b: SCOP_d1fyhb2 (B:110-223)
2c: SCOP_d1fyhe1 (E:12-109)
2d: SCOP_d1fyhe2 (E:110-222)
View:
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Interferons/interleukin-10 (IL-10)
(41)
Protein domain
:
Interferon-gamma
(8)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1fyha1
A:0-124
1b
d1fyha2
A:201-324
1c
d1fyhd1
D:0-124
1d
d1fyhd2
D:201-324
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Interferon-gamma receptor alpha chain
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1fyhb1
B:12-109
2b
d1fyhb2
B:110-223
2c
d1fyhe1
E:12-109
2d
d1fyhe2
E:110-222
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1fyhA01 (A:0-121)
1b: CATH_1fyhD01 (D:0-121)
1c: CATH_1fyhA02 (A:201-324)
1d: CATH_1fyhD02 (D:201-324)
2a: CATH_1fyhB02 (B:109-222)
2b: CATH_1fyhE02 (E:109-221)
2c: CATH_1fyhB01 (B:12-108)
2d: CATH_1fyhE01 (E:12-108)
View:
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)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
Human (Homo sapiens)
(110)
1a
1fyhA01
A:0-121
1b
1fyhD01
D:0-121
1c
1fyhA02
A:201-324
1d
1fyhD02
D:201-324
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1fyhB02
B:109-222
2b
1fyhE02
E:109-221
2c
1fyhB01
B:12-108
2d
1fyhE01
E:12-108
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain D
Chain E
Asymmetric Unit 1
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Asym.Unit (162 KB)
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