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1FQV
Biol. Unit 4
Info
Asym.Unit (597 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (80 KB)
Biol.Unit 4 (80 KB)
Biol.Unit 5 (80 KB)
Biol.Unit 6 (80 KB)
Biol.Unit 7 (80 KB)
Biol.Unit 8 (80 KB)
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(1)
Title
:
INSIGHTS INTO SCF UBIQUITIN LIGASES FROM THE STRUCTURE OF THE SKP1-SKP2 COMPLEX
Authors
:
B. A. Schulman, A. C. Carrano, P. D. Jeffrey, Z. Bowen, E. R. Kinnucan, M. S. Finnin, S. J. Elledge, J. W. Harper, M. Pagano, N. P. Pavletich
Date
:
06 Sep 00 (Deposition) - 29 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Biol. Unit 7: M,N (1x)
Biol. Unit 8: O,P (1x)
Keywords
:
Skp1, Skp2, F-Box, Lrr, Leucine-Rich Repeat, Scf, Ubiquitin, E3, Ubiquitin Protein Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. A. Schulman, A. C. Carrano, P. D. Jeffrey, Z. Bowen, E. R. Kinnucan, M. S. Finnin, S. J. Elledge, J. W. Harper, M. Pagano, N. P. Pavletich
Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex.
Nature V. 408 381 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051999 (F14L, chain H, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051999
F
14
L
SKP1_HUMAN
Polymorphism
11538034
H
F
14
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 32)
Info
All SCOP Domains
1a: SCOP_d1fqva1 (A:107-145)
1b: SCOP_d1fqvm1 (M:107-145)
1c: SCOP_d1fqvo1 (O:107-145)
1d: SCOP_d1fqvc1 (C:107-145)
1e: SCOP_d1fqve1 (E:107-145)
1f: SCOP_d1fqvg1 (G:107-145)
1g: SCOP_d1fqvi1 (I:107-145)
1h: SCOP_d1fqvk1 (K:107-145)
2a: SCOP_d1fqvb1 (B:85-160)
2b: SCOP_d1fqvl1 (L:85-160)
2c: SCOP_d1fqvn1 (N:85-160)
2d: SCOP_d1fqvp1 (P:85-160)
2e: SCOP_d1fqvd1 (D:85-160)
2f: SCOP_d1fqvf1 (F:85-160)
2g: SCOP_d1fqvh1 (H:85-160)
2h: SCOP_d1fqvj1 (J:85-160)
3a: SCOP_d1fqvb2 (B:2-68)
3b: SCOP_d1fqvl2 (L:2-68)
3c: SCOP_d1fqvn2 (N:2-68)
3d: SCOP_d1fqvp2 (P:2-68)
3e: SCOP_d1fqvd2 (D:2-68)
3f: SCOP_d1fqvf2 (F:2-68)
3g: SCOP_d1fqvh2 (H:2-68)
3h: SCOP_d1fqvj2 (J:2-68)
4a: SCOP_d1fqva2 (A:146-431)
4b: SCOP_d1fqvc2 (C:146-431)
4c: SCOP_d1fqve2 (E:146-431)
4d: SCOP_d1fqvg2 (G:146-431)
4e: SCOP_d1fqvi2 (I:146-431)
4f: SCOP_d1fqvk2 (K:146-431)
4g: SCOP_d1fqvm2 (M:146-431)
4h: SCOP_d1fqvo2 (O:146-431)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
F-box domain
(12)
Superfamily
:
F-box domain
(12)
Family
:
F-box domain
(12)
Protein domain
:
Skp2
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1fqva1
A:107-145
1b
d1fqvm1
M:107-145
1c
d1fqvo1
O:107-145
1d
d1fqvc1
C:107-145
1e
d1fqve1
E:107-145
1f
d1fqvg1
G:107-145
1g
d1fqvi1
I:107-145
1h
d1fqvk1
K:107-145
Fold
:
Skp1 dimerisation domain-like
(18)
Superfamily
:
Skp1 dimerisation domain-like
(18)
Family
:
Skp1 dimerisation domain-like
(13)
Protein domain
:
Cyclin A/CDK2-associated p45, Skp1
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d1fqvb1
B:85-160
2b
d1fqvl1
L:85-160
2c
d1fqvn1
N:85-160
2d
d1fqvp1
P:85-160
2e
d1fqvd1
D:85-160
2f
d1fqvf1
F:85-160
2g
d1fqvh1
H:85-160
2h
d1fqvj1
J:85-160
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
POZ domain
(79)
Superfamily
:
POZ domain
(79)
Family
:
BTB/POZ domain
(43)
Protein domain
:
Cyclin A/CDK2-associated p45, Skp1
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
3a
d1fqvb2
B:2-68
3b
d1fqvl2
L:2-68
3c
d1fqvn2
N:2-68
3d
d1fqvp2
P:2-68
3e
d1fqvd2
D:2-68
3f
d1fqvf2
F:2-68
3g
d1fqvh2
H:2-68
3h
d1fqvj2
J:2-68
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
RNI-like
(17)
Family
:
Cyclin A/CDK2-associated p19, Skp2
(4)
Protein domain
:
Cyclin A/CDK2-associated p19, Skp2
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
4a
d1fqva2
A:146-431
4b
d1fqvc2
C:146-431
4c
d1fqve2
E:146-431
4d
d1fqvg2
G:146-431
4e
d1fqvi2
I:146-431
4f
d1fqvk2
K:146-431
4g
d1fqvm2
M:146-431
4h
d1fqvo2
O:146-431
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1fqvB00 (B:2-160)
1b: CATH_1fqvD00 (D:2-160)
1c: CATH_1fqvF00 (F:2-160)
1d: CATH_1fqvH00 (H:2-160)
1e: CATH_1fqvJ00 (J:2-160)
1f: CATH_1fqvL00 (L:2-160)
1g: CATH_1fqvN00 (N:2-160)
1h: CATH_1fqvP00 (P:2-160)
2a: CATH_1fqvA00 (A:107-431)
2b: CATH_1fqvC00 (C:107-431)
2c: CATH_1fqvE00 (E:107-431)
2d: CATH_1fqvG00 (G:107-431)
2e: CATH_1fqvI00 (I:107-431)
2f: CATH_1fqvK00 (K:107-431)
2g: CATH_1fqvM00 (M:107-431)
2h: CATH_1fqvO00 (O:107-431)
View:
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)
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Potassium Channel Kv1.1; Chain A
(53)
Homologous Superfamily
:
Potassium Channel Kv1.1; Chain A
(53)
Human (Homo sapiens)
(30)
1a
1fqvB00
B:2-160
1b
1fqvD00
D:2-160
1c
1fqvF00
F:2-160
1d
1fqvH00
H:2-160
1e
1fqvJ00
J:2-160
1f
1fqvL00
L:2-160
1g
1fqvN00
N:2-160
1h
1fqvP00
P:2-160
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Human (Homo sapiens)
(26)
2a
1fqvA00
A:107-431
2b
1fqvC00
C:107-431
2c
1fqvE00
E:107-431
2d
1fqvG00
G:107-431
2e
1fqvI00
I:107-431
2f
1fqvK00
K:107-431
2g
1fqvM00
M:107-431
2h
1fqvO00
O:107-431
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Pfam Domains
(0, 0)
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Asym.Unit (597 KB)
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