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1FQV
Asym. Unit
Info
Asym.Unit (597 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (80 KB)
Biol.Unit 4 (80 KB)
Biol.Unit 5 (80 KB)
Biol.Unit 6 (80 KB)
Biol.Unit 7 (80 KB)
Biol.Unit 8 (80 KB)
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(1)
Title
:
INSIGHTS INTO SCF UBIQUITIN LIGASES FROM THE STRUCTURE OF THE SKP1-SKP2 COMPLEX
Authors
:
B. A. Schulman, A. C. Carrano, P. D. Jeffrey, Z. Bowen, E. R. Kinnucan, M. S. Finnin, S. J. Elledge, J. W. Harper, M. Pagano, N. P. Pavletich
Date
:
06 Sep 00 (Deposition) - 29 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Biol. Unit 7: M,N (1x)
Biol. Unit 8: O,P (1x)
Keywords
:
Skp1, Skp2, F-Box, Lrr, Leucine-Rich Repeat, Scf, Ubiquitin, E3, Ubiquitin Protein Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. A. Schulman, A. C. Carrano, P. D. Jeffrey, Z. Bowen, E. R. Kinnucan, M. S. Finnin, S. J. Elledge, J. W. Harper, M. Pagano, N. P. Pavletich
Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex.
Nature V. 408 381 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051999 (F14L, chain B/D/F/H/J/L/N/P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051999
F
14
L
SKP1_HUMAN
Polymorphism
11538034
B/D/F/H/J/L/N/P
F
14
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(13, 104)
Info
All Exons
Exon 1.3 (A:107-143 | C:107-143 | E:107-143 ...)
Exon 1.4 (A:143-191 | C:143-191 | E:143-191 ...)
Exon 1.5 (A:191-236 | C:191-236 | E:191-236 ...)
Exon 1.6b (A:236-269 | C:236-269 | E:236-269 ...)
Exon 1.7 (A:269-313 | C:269-313 | E:269-313 ...)
Exon 1.8 (A:313-330 | C:313-330 | E:313-330 ...)
Exon 1.9 (A:330-366 | C:330-366 | E:330-366 ...)
Exon 1.12c (A:366-431 | C:366-431 | E:366-431 ...)
Exon 2.5b (B:2-33 | D:2-33 | F:2-33 | H:2-33 ...)
Exon 2.7 (B:33-57 (gaps) | D:33-57 (gaps) | ...)
Exon 2.8d (B:58-105 (gaps) | D:58-105 (gaps) ...)
Exon 2.9d (B:106-152 | D:106-152 | F:106-152 ...)
Exon 2.9l (B:153-160 | D:153-160 | F:153-160 ...)
View:
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All Exon Boundaries
01: Boundary 1.2a/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6b
05: Boundary 1.6b/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.12c
09: Boundary 1.12c/-
10: Boundary 2.2a/2.5b
11: Boundary 2.5b/2.7
12: Boundary 2.7/2.8d
13: Boundary 2.8d/2.9d
14: Boundary 2.9d/2.9l
15: Boundary 2.9l/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000274255
1b
ENSE00001852758
chr5:
36152169-36152372
204
SKP2_HUMAN
1-3
3
0
-
-
1.2a
ENST00000274255
2a
ENSE00001130153
chr5:
36152873-36153144
272
SKP2_HUMAN
3-94
92
0
-
-
1.3
ENST00000274255
3
ENSE00001006180
chr5:
36163747-36163858
112
SKP2_HUMAN
94-131
38
8
A:107-143
C:107-143
E:107-143
G:107-143
I:107-143
K:107-143
M:107-143
O:107-143
37
37
37
37
37
37
37
37
1.4
ENST00000274255
4
ENSE00001006177
chr5:
36166621-36166764
144
SKP2_HUMAN
131-179
49
8
A:143-191
C:143-191
E:143-191
G:143-191
I:143-191
K:143-191
M:143-191
O:143-191
49
49
49
49
49
49
49
49
1.5
ENST00000274255
5
ENSE00001006179
chr5:
36168415-36168549
135
SKP2_HUMAN
179-224
46
8
A:191-236
C:191-236
E:191-236
G:191-236
I:191-236
K:191-236
M:191-236
O:191-236
46
46
46
46
46
46
46
46
1.6b
ENST00000274255
6b
ENSE00001006176
chr5:
36170446-36170544
99
SKP2_HUMAN
224-257
34
8
A:236-269
C:236-269
E:236-269
G:236-269
I:236-269
K:236-269
M:236-269
O:236-269
34
34
34
34
34
34
34
34
1.7
ENST00000274255
7
ENSE00002147593
chr5:
36171705-36171835
131
SKP2_HUMAN
257-301
45
8
A:269-313
C:269-313
E:269-313
G:269-313
I:269-313
K:269-313
M:269-313
O:269-313
45
45
45
45
45
45
45
45
1.8
ENST00000274255
8
ENSE00000971194
chr5:
36177067-36177118
52
SKP2_HUMAN
301-318
18
8
A:313-330
C:313-330
E:313-330
G:313-330
I:313-330
K:313-330
M:313-330
O:313-330
18
18
18
18
18
18
18
18
1.9
ENST00000274255
9
ENSE00000971195
chr5:
36177287-36177394
108
SKP2_HUMAN
318-354
37
8
A:330-366
C:330-366
E:330-366
G:330-366
I:330-366
K:330-366
M:330-366
O:330-366
37
37
37
37
37
37
37
37
1.12c
ENST00000274255
12c
ENSE00001082238
chr5:
36181920-36184421
2502
SKP2_HUMAN
354-424
71
8
A:366-431
C:366-431
E:366-431
G:366-431
I:366-431
K:366-431
M:366-431
O:366-431
66
66
66
66
66
66
66
66
2.2a
ENST00000353411
2a
ENSE00001169035
chr5:
133512729-133512546
184
SKP1_HUMAN
-
0
0
-
-
2.5b
ENST00000353411
5b
ENSE00000763313
chr5:
133509713-133509617
97
SKP1_HUMAN
1-33
33
8
B:2-33
D:2-33
F:2-33
H:2-33
J:2-33
L:2-33
N:2-33
P:2-33
32
32
32
32
32
32
32
32
2.7
ENST00000353411
7
ENSE00002156080
chr5:
133502934-133502861
74
SKP1_HUMAN
33-57
25
8
B:33-57 (gaps)
D:33-57 (gaps)
F:33-57 (gaps)
H:33-57 (gaps)
J:33-57 (gaps)
L:33-57 (gaps)
N:33-57 (gaps)
P:33-57 (gaps)
25
25
25
25
25
25
25
25
2.8d
ENST00000353411
8d
ENSE00000763311
chr5:
133496821-133496678
144
SKP1_HUMAN
58-105
48
8
B:58-105 (gaps)
D:58-105 (gaps)
F:58-105 (gaps)
H:58-105 (gaps)
J:58-105 (gaps)
L:58-105 (gaps)
N:58-105 (gaps)
P:58-105 (gaps)
48
48
48
48
48
48
48
48
2.9d
ENST00000353411
9d
ENSE00001328116
chr5:
133494286-133494146
141
SKP1_HUMAN
106-152
47
8
B:106-152
D:106-152
F:106-152
H:106-152
J:106-152
L:106-152
N:106-152
P:106-152
47
47
47
47
47
47
47
47
2.9l
ENST00000353411
9l
ENSE00001291683
chr5:
133493459-133492082
1378
SKP1_HUMAN
153-163
11
8
B:153-160
D:153-160
F:153-160
H:153-160
J:153-160
L:153-160
N:153-160
P:153-160
8
8
8
8
8
8
8
8
[
close EXON info
]
SCOP Domains
(4, 32)
Info
All SCOP Domains
1a: SCOP_d1fqva1 (A:107-145)
1b: SCOP_d1fqvm1 (M:107-145)
1c: SCOP_d1fqvo1 (O:107-145)
1d: SCOP_d1fqvc1 (C:107-145)
1e: SCOP_d1fqve1 (E:107-145)
1f: SCOP_d1fqvg1 (G:107-145)
1g: SCOP_d1fqvi1 (I:107-145)
1h: SCOP_d1fqvk1 (K:107-145)
2a: SCOP_d1fqvb1 (B:85-160)
2b: SCOP_d1fqvl1 (L:85-160)
2c: SCOP_d1fqvn1 (N:85-160)
2d: SCOP_d1fqvp1 (P:85-160)
2e: SCOP_d1fqvd1 (D:85-160)
2f: SCOP_d1fqvf1 (F:85-160)
2g: SCOP_d1fqvh1 (H:85-160)
2h: SCOP_d1fqvj1 (J:85-160)
3a: SCOP_d1fqvb2 (B:2-68)
3b: SCOP_d1fqvl2 (L:2-68)
3c: SCOP_d1fqvn2 (N:2-68)
3d: SCOP_d1fqvp2 (P:2-68)
3e: SCOP_d1fqvd2 (D:2-68)
3f: SCOP_d1fqvf2 (F:2-68)
3g: SCOP_d1fqvh2 (H:2-68)
3h: SCOP_d1fqvj2 (J:2-68)
4a: SCOP_d1fqva2 (A:146-431)
4b: SCOP_d1fqvc2 (C:146-431)
4c: SCOP_d1fqve2 (E:146-431)
4d: SCOP_d1fqvg2 (G:146-431)
4e: SCOP_d1fqvi2 (I:146-431)
4f: SCOP_d1fqvk2 (K:146-431)
4g: SCOP_d1fqvm2 (M:146-431)
4h: SCOP_d1fqvo2 (O:146-431)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
F-box domain
(12)
Superfamily
:
F-box domain
(12)
Family
:
F-box domain
(12)
Protein domain
:
Skp2
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1fqva1
A:107-145
1b
d1fqvm1
M:107-145
1c
d1fqvo1
O:107-145
1d
d1fqvc1
C:107-145
1e
d1fqve1
E:107-145
1f
d1fqvg1
G:107-145
1g
d1fqvi1
I:107-145
1h
d1fqvk1
K:107-145
Fold
:
Skp1 dimerisation domain-like
(18)
Superfamily
:
Skp1 dimerisation domain-like
(18)
Family
:
Skp1 dimerisation domain-like
(13)
Protein domain
:
Cyclin A/CDK2-associated p45, Skp1
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d1fqvb1
B:85-160
2b
d1fqvl1
L:85-160
2c
d1fqvn1
N:85-160
2d
d1fqvp1
P:85-160
2e
d1fqvd1
D:85-160
2f
d1fqvf1
F:85-160
2g
d1fqvh1
H:85-160
2h
d1fqvj1
J:85-160
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
POZ domain
(79)
Superfamily
:
POZ domain
(79)
Family
:
BTB/POZ domain
(43)
Protein domain
:
Cyclin A/CDK2-associated p45, Skp1
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
3a
d1fqvb2
B:2-68
3b
d1fqvl2
L:2-68
3c
d1fqvn2
N:2-68
3d
d1fqvp2
P:2-68
3e
d1fqvd2
D:2-68
3f
d1fqvf2
F:2-68
3g
d1fqvh2
H:2-68
3h
d1fqvj2
J:2-68
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
RNI-like
(17)
Family
:
Cyclin A/CDK2-associated p19, Skp2
(4)
Protein domain
:
Cyclin A/CDK2-associated p19, Skp2
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
4a
d1fqva2
A:146-431
4b
d1fqvc2
C:146-431
4c
d1fqve2
E:146-431
4d
d1fqvg2
G:146-431
4e
d1fqvi2
I:146-431
4f
d1fqvk2
K:146-431
4g
d1fqvm2
M:146-431
4h
d1fqvo2
O:146-431
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1fqvB00 (B:2-160)
1b: CATH_1fqvD00 (D:2-160)
1c: CATH_1fqvF00 (F:2-160)
1d: CATH_1fqvH00 (H:2-160)
1e: CATH_1fqvJ00 (J:2-160)
1f: CATH_1fqvL00 (L:2-160)
1g: CATH_1fqvN00 (N:2-160)
1h: CATH_1fqvP00 (P:2-160)
2a: CATH_1fqvA00 (A:107-431)
2b: CATH_1fqvC00 (C:107-431)
2c: CATH_1fqvE00 (E:107-431)
2d: CATH_1fqvG00 (G:107-431)
2e: CATH_1fqvI00 (I:107-431)
2f: CATH_1fqvK00 (K:107-431)
2g: CATH_1fqvM00 (M:107-431)
2h: CATH_1fqvO00 (O:107-431)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Potassium Channel Kv1.1; Chain A
(53)
Homologous Superfamily
:
Potassium Channel Kv1.1; Chain A
(53)
Human (Homo sapiens)
(30)
1a
1fqvB00
B:2-160
1b
1fqvD00
D:2-160
1c
1fqvF00
F:2-160
1d
1fqvH00
H:2-160
1e
1fqvJ00
J:2-160
1f
1fqvL00
L:2-160
1g
1fqvN00
N:2-160
1h
1fqvP00
P:2-160
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Human (Homo sapiens)
(26)
2a
1fqvA00
A:107-431
2b
1fqvC00
C:107-431
2c
1fqvE00
E:107-431
2d
1fqvG00
G:107-431
2e
1fqvI00
I:107-431
2f
1fqvK00
K:107-431
2g
1fqvM00
M:107-431
2h
1fqvO00
O:107-431
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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