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1FQJ
Asym. Unit
Info
Asym.Unit (172 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HETEROTRIMERIC COMPLEX OF THE RGS DOMAIN OF RGS9, THE GAMMA SUBUNIT OF PHOSPHODIESTERASE AND THE GT/I1 CHIMERA ALPHA SUBUNIT [(RGS9)-(PDEGAMMA)-(GT/I1ALPHA)-(GDP)-(ALF4-)-(MG2+)]
Authors
:
K. C. Slep, M. A. Kercher, W. He, C. W. Cowan, T. G. Wensel, P. B. Sigler
Date
:
05 Sep 00 (Deposition) - 28 Feb 01 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.02
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E (1x)
Keywords
:
Rgs9, Transducin, Effector, Pdegamma, G Protein, Phototransduction, Rod, Rgs, Phosphodiesterase, Gap, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. C. Slep, M. A. Kercher, W. He, C. W. Cowan, T. G. Wensel, P. B. Sigler
Structural Determinants For Regulation Of Phosphodiesterase By A G Protein At 2. 0 A.
Nature V. 409 1071 2001
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: TETRAFLUOROALUMINATE ION (ALFa)
1b: TETRAFLUOROALUMINATE ION (ALFb)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALF
2
Ligand/Ion
TETRAFLUOROALUMINATE ION
2
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:43 , THR A:177 , GDP A:360 , ALF A:362 , HOH A:364 , HOH A:365
BINDING SITE FOR RESIDUE MG A 352
2
AC2
SOFTWARE
GLY A:38 , GLU A:39 , LYS A:42 , ARG A:174 , VAL A:175 , LYS A:176 , THR A:177 , VAL A:197 , GLY A:199 , GLN A:200 , MG A:352 , GDP A:360 , HOH A:363 , HOH A:364 , HOH A:365
BINDING SITE FOR RESIDUE ALF A 362
3
AC3
SOFTWARE
SER D:43 , THR D:177 , GDP D:361 , ALF D:363 , HOH D:365 , HOH D:366
BINDING SITE FOR RESIDUE MG D 352
4
AC4
SOFTWARE
GLY D:38 , GLU D:39 , LYS D:42 , ARG D:174 , VAL D:175 , LYS D:176 , THR D:177 , VAL D:197 , GLY D:199 , GLN D:200 , MG D:352 , GDP D:361 , HOH D:364 , HOH D:365 , HOH D:366
BINDING SITE FOR RESIDUE ALF D 363
5
AC5
SOFTWARE
GLU A:39 , SER A:40 , GLY A:41 , LYS A:42 , SER A:43 , THR A:44 , ASP A:146 , SER A:147 , LEU A:171 , ARG A:172 , SER A:173 , ARG A:174 , ASN A:265 , LYS A:266 , ASP A:268 , LEU A:269 , CYS A:321 , ALA A:322 , THR A:323 , MG A:352 , ALF A:362 , HOH A:364 , HOH A:366 , HOH A:368 , HOH A:374
BINDING SITE FOR RESIDUE GDP A 360
6
AC6
SOFTWARE
GLY D:38 , GLU D:39 , SER D:40 , GLY D:41 , LYS D:42 , SER D:43 , THR D:44 , ASP D:146 , SER D:147 , LEU D:171 , ARG D:172 , SER D:173 , ARG D:174 , ASN D:265 , LYS D:266 , ASP D:268 , LEU D:269 , CYS D:321 , ALA D:322 , THR D:323 , MG D:352 , ALF D:363 , HOH D:365 , HOH D:368 , HOH D:369 , HOH D:373
BINDING SITE FOR RESIDUE GDP D 361
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RGS (B:299-414,E:299-414)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RGS
PS50132
RGS domain profile.
RGS9_BOVIN
299-414
2
B:299-414
E:299-414
[
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]
Exons
(11, 19)
Info
All Exons
Exon 1.1 (C:50-61)
Exon 1.2 (C:61-75)
Exon 1.3 (C:75-87)
Exon 2.1 (A:28-36 | D:28-36)
Exon 2.2 (A:36-50 | D:36-50)
Exon 2.3 (A:50-97 | D:50-97)
Exon 2.4 (A:98-150 | D:98-150)
Exon 2.5 (A:150-193 | D:150-193)
Exon 2.6 (A:193-236 | D:193-236)
Exon 2.7 (A:237-288 | D:237-288)
Exon 2.8 (A:288-344 | D:288-342)
View:
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Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/-
05: Boundary -/2.1
06: Boundary 2.1/2.2
07: Boundary 2.2/2.3
08: Boundary 2.3/2.4
09: Boundary 2.4/2.5
10: Boundary 2.5/2.6
11: Boundary 2.6/2.7
12: Boundary 2.7/2.8
13: Boundary 2.8/2.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000000459
1
ENSBTAE00000003536
chr19:
52647788-52647987
200
CNRG_BOVIN
1-61
61
1
C:50-61
12
1.2
ENSBTAT00000000459
2
ENSBTAE00000003538
chr19:
52648443-52648483
41
CNRG_BOVIN
61-75
15
1
C:61-75
15
1.3
ENSBTAT00000000459
3
ENSBTAE00000003539
chr19:
52648922-52649512
591
CNRG_BOVIN
75-99
25
1
C:75-87
13
2.1
ENSBTAT00000023990
1
ENSBTAE00000247883
chr22:
51063839-51063597
243
GNAT1_BOVIN
1-36
36
2
A:28-36
D:28-36
9
9
2.2
ENSBTAT00000023990
2
ENSBTAE00000388493
chr22:
51062405-51062363
43
GNAT1_BOVIN
36-50
15
2
A:36-50
D:36-50
15
15
2.3
ENSBTAT00000023990
3
ENSBTAE00000247881
chr22:
51062224-51062083
142
GNAT1_BOVIN
50-97
48
2
A:50-97
D:50-97
48
48
2.4
ENSBTAT00000023990
4
ENSBTAE00000247880
chr22:
51061992-51061835
158
GNAT1_BOVIN
98-150
53
2
A:98-150
D:98-150
53
53
2.5
ENSBTAT00000023990
5
ENSBTAE00000195357
chr22:
51061741-51061613
129
GNAT1_BOVIN
150-193
44
2
A:150-193
D:150-193
44
44
2.6
ENSBTAT00000023990
6
ENSBTAE00000419260
chr22:
51061351-51061222
130
GNAT1_BOVIN
193-236
44
2
A:193-236
D:193-236
44
44
2.7
ENSBTAT00000023990
7
ENSBTAE00000195359
chr22:
51060899-51060746
154
GNAT1_BOVIN
237-288
52
2
A:237-288
D:237-288
52
52
2.8
ENSBTAT00000023990
8
ENSBTAE00000195360
chr22:
51060623-51060432
192
GNAT1_BOVIN
288-350
63
2
A:288-344
D:288-342
57
55
2.9
ENSBTAT00000023990
9
ENSBTAE00000195361
chr22:
51060077-51058825
1253
GNAT1_BOVIN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(4, 7)
Info
All SCOP Domains
1a: SCOP_d1fqjb_ (B:)
1b: SCOP_d1fqje_ (E:)
2a: SCOP_d1fqja1 (A:61-181)
2b: SCOP_d1fqjd1 (D:61-181)
3a: SCOP_d1fqja2 (A:28-60,A:182-344)
3b: SCOP_d1fqjd2 (D:28-60,D:182-342)
4a: SCOP_d1fqjc_ (C:)
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(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Regulator of G-protein signaling, RGS
(52)
Superfamily
:
Regulator of G-protein signaling, RGS
(52)
Family
:
Regulator of G-protein signaling, RGS
(27)
Protein domain
:
RGS9, RGS domain
(3)
Cow (Bos taurus) [TaxId: 9913]
(3)
1a
d1fqjb_
B:
1b
d1fqje_
E:
Fold
:
Transducin (alpha subunit), insertion domain
(49)
Superfamily
:
Transducin (alpha subunit), insertion domain
(49)
Family
:
Transducin (alpha subunit), insertion domain
(49)
Protein domain
:
Transducin (alpha subunit), insertion domain
(49)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(19)
2a
d1fqja1
A:61-181
2b
d1fqjd1
D:61-181
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Transducin (alpha subunit)
(51)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(21)
3a
d1fqja2
A:28-60,A:182-344
3b
d1fqjd2
D:28-60,D:182-342
Class
:
Peptides
(792)
Fold
:
cAMP and cGMP phosphodiesterase (PDE) fragments
(2)
Superfamily
:
cAMP and cGMP phosphodiesterase (PDE) fragments
(2)
Family
:
cAMP and cGMP phosphodiesterase (PDE) fragments
(2)
Protein domain
:
cGMP-PDE gamma
(1)
Cow (Bos taurus) [TaxId: 9913]
(1)
4a
d1fqjc_
C:
[
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]
CATH Domains
(5, 9)
Info
all CATH domains
1a: CATH_1fqjA01 (A:30-57,A:177-339)
1b: CATH_1fqjD01 (D:30-57,D:177-339)
2a: CATH_1fqjC00 (C:50-87)
3a: CATH_1fqjA02 (A:58-176)
3b: CATH_1fqjD02 (D:58-176)
4a: CATH_1fqjB01 (B:288-320,B:400-413)
4b: CATH_1fqjE01 (E:288-320,E:400-413)
5a: CATH_1fqjB02 (B:321-399)
5b: CATH_1fqjE02 (E:321-399)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Cattle, norway rat (Bos taurus, rattus norvegicus)
(2)
1a
1fqjA01
A:30-57,A:177-339
1b
1fqjD01
D:30-57,D:177-339
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
GMP-PDE GAMMA fragment
(1)
Homologous Superfamily
:
[code=4.10.980.10, no name defined]
(1)
Cattle, norway rat (Bos taurus, rattus norvegicus)
(1)
2a
1fqjC00
C:50-87
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GI Alpha 1, domain 2-like
(67)
Homologous Superfamily
:
GI Alpha 1, domain 2-like
(66)
Cattle, norway rat (Bos taurus, rattus norvegicus)
(2)
3a
1fqjA02
A:58-176
3b
1fqjD02
D:58-176
Topology
:
Regulator of G-protein Signalling 4; domain 1
(15)
Homologous Superfamily
:
[code=1.10.196.10, no name defined]
(14)
Cattle, norway rat (Bos taurus, rattus norvegicus)
(2)
4a
1fqjB01
B:288-320,B:400-413
4b
1fqjE01
E:288-320,E:400-413
Topology
:
Regulator of G-protein Signalling 4; domain 2
(19)
Homologous Superfamily
:
Regulator of G-protein Signalling 4, domain 2
(19)
Cattle, norway rat (Bos taurus, rattus norvegicus)
(2)
5a
1fqjB02
B:321-399
5b
1fqjE02
E:321-399
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (172 KB)
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