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Asym. Unit
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Asym.Unit (136 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (68 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM
Authors
:
J. Liu, C. L. Smith, D. Deryckere, K. Deangelis, G. S. Martin, J. M. Berger
Date
:
22 Aug 00 (Deposition) - 04 Oct 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cdc6, Cdc18, Orc1, Aaa Protein, Dna Replication Initation Factor, Cell Cycle Control Factor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Liu, C. L. Smith, D. Deryckere, K. Deangelis, G. S. Martin, J. M. Berger
Structure And Function Of Cdc6/Cdc18: Implications For Origin Recognition And Checkpoint Control.
Mol. Cell V. 6 637 2000
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
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No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:57 , ADP A:398 , HOH A:403 , HOH A:407 , HOH A:420 , HOH A:426
BINDING SITE FOR RESIDUE MG A 390
2
AC2
SOFTWARE
THR B:57 , ADP B:399 , HOH B:415 , HOH B:419 , HOH B:420 , HOH B:421
BINDING SITE FOR RESIDUE MG B 391
3
AC3
SOFTWARE
TYR A:13 , PRO A:15 , LEU A:18 , PRO A:19 , ARG A:21 , GLY A:53 , THR A:54 , GLY A:55 , LYS A:56 , THR A:57 , VAL A:58 , TYR A:192 , ILE A:200 , ARG A:204 , ALA A:239 , ILE A:243 , MG A:390 , HOH A:407 , HOH A:408 , HOH A:419 , HOH A:420 , HOH A:426 , HOH A:430 , HOH A:453 , HOH A:508
BINDING SITE FOR RESIDUE ADP A 398
4
AC4
SOFTWARE
TYR B:13 , LEU B:18 , PRO B:19 , ARG B:21 , GLY B:53 , THR B:54 , GLY B:55 , LYS B:56 , THR B:57 , VAL B:58 , TYR B:192 , ILE B:200 , ARG B:204 , ALA B:239 , ILE B:243 , MG B:391 , HOH B:401 , HOH B:404 , HOH B:415 , HOH B:416 , HOH B:419 , HOH B:420 , HOH B:444 , HOH B:474
BINDING SITE FOR RESIDUE ADP B 399
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1fnna1 (A:277-388)
1b: SCOP_d1fnnb1 (B:277-388)
2a: SCOP_d1fnna2 (A:1-276)
2b: SCOP_d1fnnb2 (B:1-276)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Helicase DNA-binding domain
(13)
Protein domain
:
CDC6, C-terminal domain
(1)
Pyrobaculum aerophilum [TaxId: 13773]
(1)
1a
d1fnna1
A:277-388
1b
d1fnnb1
B:277-388
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Extended AAA-ATPase domain
(92)
Protein domain
:
CDC6, N-domain
(1)
Pyrobaculum aerophilum [TaxId: 13773]
(1)
2a
d1fnna2
A:1-276
2b
d1fnnb2
B:1-276
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1fnnA02 (A:18-191)
1b: CATH_1fnnB02 (B:18-191)
2a: CATH_1fnnB03 (B:276-387)
2b: CATH_1fnnA03 (A:276-388)
3a: CATH_1fnnA01 (A:1-17,A:192-275)
3b: CATH_1fnnB01 (B:1-17,B:192-275)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Pyrobaculum aerophilum. Organism_taxid: 13773.
(1)
1a
1fnnA02
A:18-191
1b
1fnnB02
B:18-191
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Pyrobaculum aerophilum. Organism_taxid: 13773.
(1)
2a
1fnnB03
B:276-387
2b
1fnnA03
A:276-388
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
[code=1.10.8.60, no name defined]
(73)
Pyrobaculum aerophilum. Organism_taxid: 13773.
(1)
3a
1fnnA01
A:1-17,A:192-275
3b
1fnnB01
B:1-17,B:192-275
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Pfam Domains
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