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Getting 'Exon' information from database.
1FL7
Asym. Unit
Info
Asym.Unit (68 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (32 KB)
Biol.Unit 3 (62 KB)
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(1)
Title
:
HUMAN FOLLICLE STIMULATING HORMONE
Authors
:
K. M. Fox, J. A. Dias, P. Van Roey
Date
:
11 Aug 00 (Deposition) - 14 Mar 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Cysteine Knot, Heterodimer, Hormone-Growth Factor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. M. Fox, J. A. Dias, P. Van Roey
Three-Dimensional Structure Of Human Follicle-Stimulating Hormone.
Mol. Endocrinol. V. 15 378 2001
[
close entry info
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: ALPHA-D-MANNOSE (MANa)
1b: ALPHA-D-MANNOSE (MANb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
3b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
3c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
2
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NDG
3
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
4
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:52 , NDG A:252 , TYR B:58
BINDING SITE FOR RESIDUE NAG A 152
02
AC2
SOFTWARE
NAG A:152
BINDING SITE FOR RESIDUE NDG A 252
03
AC3
SOFTWARE
PRO A:24 , VAL A:68 , ASN A:78 , NAG A:278
BINDING SITE FOR RESIDUE NAG A 178
04
AC4
SOFTWARE
NAG A:178 , MAN A:378
BINDING SITE FOR RESIDUE NAG A 278
05
AC5
SOFTWARE
NAG A:278
BINDING SITE FOR RESIDUE MAN A 378
06
AC6
SOFTWARE
THR B:6 , ASN B:7 , NAG B:113
BINDING SITE FOR RESIDUE NAG B 112
07
AC7
SOFTWARE
NAG B:112
BINDING SITE FOR RESIDUE NAG B 113
08
AC8
SOFTWARE
ASN C:52 , NDG C:252 , TYR D:58 , THR D:75
BINDING SITE FOR RESIDUE NAG C 152
09
AC9
SOFTWARE
NAG C:152 , THR D:75
BINDING SITE FOR RESIDUE NDG C 252
10
BC1
SOFTWARE
PRO C:24 , LEU C:26 , ASN C:78 , NDG C:278 , MAN C:378
BINDING SITE FOR RESIDUE NAG C 178
11
BC2
SOFTWARE
NAG C:178 , MAN C:378
BINDING SITE FOR RESIDUE NDG C 278
12
BC3
SOFTWARE
NAG C:178 , NDG C:278
BINDING SITE FOR RESIDUE MAN C 378
13
BC4
SOFTWARE
ARG B:62 , ASN D:7 , ALA D:26 , NAG D:113
BINDING SITE FOR RESIDUE NAG D 112
14
BC5
SOFTWARE
ARG B:62 , NAG D:112
BINDING SITE FOR RESIDUE NAG D 113
15
BC6
SOFTWARE
ASN A:66 , ARG A:67 , ARG C:35 , PRO D:101 , SER D:102
BINDING SITE FOR RESIDUE SO4 D 410
16
BC7
SOFTWARE
ARG A:35 , GLY B:100 , PRO B:101 , SER B:102
BINDING SITE FOR RESIDUE SO4 B 510
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_033015 (C51G, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033015
C
69
G
FSHB_HUMAN
Disease (HH24)
5030776
B/D
C
51
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(5, 10)
Info
All PROSITE Patterns/Profiles
1: GLYCO_HORMONE_ALPHA_3 (A:7-90,C:7-92)
2: GLYCO_HORMONE_BETA_1 (B:28-34,D:28-34)
3: GLYCO_HORMONE_ALPHA_1 (A:28-40,C:28-40)
4: GLYCO_HORMONE_BETA_2 (B:77-104,D:77-104)
5: GLYCO_HORMONE_ALPHA_2 (A:78-90,C:78-91)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCO_HORMONE_ALPHA_3
PS50277
Glycoprotein hormones alpha chain family profile.
GLHA_HUMAN
31-116
2
A:7-90
C:7-92
2
GLYCO_HORMONE_BETA_1
PS00261
Glycoprotein hormones beta chain signature 1.
FSHB_HUMAN
46-52
2
B:28-34
D:28-34
3
GLYCO_HORMONE_ALPHA_1
PS00779
Glycoprotein hormones alpha chain signature 1.
GLHA_HUMAN
52-64
2
A:28-40
C:28-40
4
GLYCO_HORMONE_BETA_2
PS00689
Glycoprotein hormones beta chain signature 2.
FSHB_HUMAN
95-122
2
B:77-104
D:77-104
5
GLYCO_HORMONE_ALPHA_2
PS00780
Glycoprotein hormones alpha chain signature 2.
GLHA_HUMAN
102-115
2
A:78-90
C:78-91
[
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]
Exons
(5, 10)
Info
All Exons
Exon 1.2b (B:3-35 | D:3-35)
Exon 1.3b (B:36-109 | D:36-108)
Exon 2.2 (A:5-6 | C:5-6)
Exon 2.3 (A:6-67 | C:6-67)
Exon 2.4 (A:68-90 | C:68-92)
View:
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Label:
All Exon Boundaries
1: Boundary 1.1b/1.2b
2: Boundary 1.2b/1.3b
3: Boundary 1.3b/-
4: Boundary 2.1/2.2
5: Boundary 2.2/2.3
6: Boundary 2.3/2.4
7: Boundary 2.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000254122
1b
ENSE00001480046
chr11:
30252563-30252625
63
FSHB_HUMAN
-
0
0
-
-
1.2b
ENST00000254122
2b
ENSE00000900920
chr11:
30253444-30253608
165
FSHB_HUMAN
1-53
53
2
B:3-35
D:3-35
33
33
1.3b
ENST00000254122
3b
ENSE00002189614
chr11:
30255117-30256586
1470
FSHB_HUMAN
54-129
76
2
B:36-109
D:36-108
74
73
2.1
ENST00000369582
1
ENSE00001450387
chr6:
87804824-87804731
94
GLHA_HUMAN
-
0
0
-
-
2.2
ENST00000369582
2
ENSE00000798150
chr6:
87797925-87797831
95
GLHA_HUMAN
1-30
30
2
A:5-6
C:5-6
2
2
2.3
ENST00000369582
3
ENSE00000798149
chr6:
87796152-87795968
185
GLHA_HUMAN
30-91
62
2
A:6-67
C:6-67
62
62
2.4
ENST00000369582
4
ENSE00000798148
chr6:
87795551-87795216
336
GLHA_HUMAN
92-116
25
2
A:68-90
C:68-92
23
25
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1fl7b_ (B:)
1b: SCOP_d1fl7d_ (D:)
2a: SCOP_d1fl7a_ (A:)
2b: SCOP_d1fl7c_ (C:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Cystine-knot cytokines
(124)
Superfamily
:
Cystine-knot cytokines
(124)
Family
:
Gonadodropin/Follitropin
(16)
Protein domain
:
Follicle stimulating hormone, follitropin, beta chain
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1fl7b_
B:
1b
d1fl7d_
D:
Protein domain
:
Glycoprotein hormones alpha chain (Gonadotropin A, Follitropin alpha)
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d1fl7a_
A:
2b
d1fl7c_
C:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1fl7D00 (D:3-108)
1b: CATH_1fl7B00 (B:3-109)
1c: CATH_1fl7C00 (C:5-92)
1d: CATH_1fl7A00 (A:5-90)
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(
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Cystine Knot Cytokines, subunit B
(102)
Homologous Superfamily
:
Cystine-knot cytokines
(102)
Human (Homo sapiens)
(84)
1a
1fl7D00
D:3-108
1b
1fl7B00
B:3-109
1c
1fl7C00
C:5-92
1d
1fl7A00
A:5-90
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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