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1FEU
Biol. Unit 2
Info
Asym.Unit (111 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5, ONE OF THE CTC FAMILY PROTEINS, COMPLEXED WITH A FRAGMENT OF 5S RRNA.
Authors
:
R. V. Fedorov, V. A. Meshcheryakov, G. M. Gongadze, N. P. Fomenkova, N. A. Nevskaya, M. Selmer, M. Laurberg, O. Kristensen, S. Al- Karadaghi, A. Liljas, M. B. Garber, S. V. Nikonov
Date
:
23 Jul 00 (Deposition) - 25 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
General Stress Protein Ctc, 5S Rrna-Protein Complex, Cadmium Ions, Ribosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Fedorov, V. Meshcheryakov, G. Gongadze, N. Fomenkova, N. Nevskaya, M. Selmer, M. Laurberg, O. Kristensen, S. Al-Karadaghi, A. Liljas, M. Garber, S. Nikonov
Structure Of Ribosomal Protein Tl5 Complexed With Rna Provides New Insights Into The Ctc Family Of Stress Proteins.
Acta Crystallogr. , Sect. D V. 57 968 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
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Sites
(20, 20)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC8 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC5 (SOFTWARE)
10: BC6 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
14: CC4 (SOFTWARE)
15: CC6 (SOFTWARE)
16: CC7 (SOFTWARE)
17: CC8 (SOFTWARE)
18: CC9 (SOFTWARE)
19: DC1 (SOFTWARE)
20: DC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
SER A:149 , HIS A:151 , ASP A:154 , HOH D:434
BINDING SITE FOR RESIDUE CD A 299
02
AC5
SOFTWARE
HIS A:151 , HOH A:318 , ASP D:93 , HOH D:434 , HOH D:435
BINDING SITE FOR RESIDUE CD D 300
03
AC8
SOFTWARE
HIS D:54 , ASP D:123 , HOH D:323 , HOH D:324 , HOH D:325 , HOH D:343
BINDING SITE FOR RESIDUE CD D 303
04
AC9
SOFTWARE
MET D:1 , HIS D:55 , GLU D:135 , HOH D:443
BINDING SITE FOR RESIDUE CD D 304
05
BC1
SOFTWARE
GLU A:168 , HIS D:32 , SER D:92 , GLU D:94 , HOH D:425
BINDING SITE FOR RESIDUE CD D 305
06
BC2
SOFTWARE
HIS D:151 , ASP D:154
BINDING SITE FOR RESIDUE CD D 306
07
BC3
SOFTWARE
HIS D:121 , GLU D:169 , HOH D:336 , HOH D:355
BINDING SITE FOR RESIDUE CD D 307
08
BC4
SOFTWARE
HIS D:121 , ASP D:123 , HOH D:328 , HOH D:336
BINDING SITE FOR RESIDUE CD D 308
09
BC5
SOFTWARE
A C:109 , HOH C:319 , HOH C:320 , HOH F:326 , HOH F:344
BINDING SITE FOR RESIDUE MG C 309
10
BC6
SOFTWARE
ASP D:40 , HOH D:381 , HOH D:406 , HOH D:436
BINDING SITE FOR RESIDUE MG D 310
11
BC9
SOFTWARE
U B:80 , HOH D:380 , A E:78 , A F:99
BINDING SITE FOR RESIDUE MG B 313
12
CC2
SOFTWARE
G E:75 , G E:76 , HOH E:331 , HOH E:348 , HOH E:349 , HOH F:357
BINDING SITE FOR RESIDUE MG E 315
13
CC3
SOFTWARE
U E:80 , HOH E:328 , HOH E:350 , U F:95 , G F:96 , HOH F:335
BINDING SITE FOR RESIDUE MG F 316
14
CC4
SOFTWARE
C F:97 , G F:98
BINDING SITE FOR RESIDUE MG F 317
15
CC6
SOFTWARE
HOH D:437 , HOH E:351
BINDING SITE FOR RESIDUE MG D 319
16
CC7
SOFTWARE
GLU D:13 , HOH E:351 , A F:94
BINDING SITE FOR RESIDUE MG D 320
17
CC8
SOFTWARE
TYR D:38 , HOH D:375 , G E:83 , HOH E:351
BINDING SITE FOR RESIDUE MG E 321
18
CC9
SOFTWARE
C F:110 , HOH F:344
BINDING SITE FOR RESIDUE MG F 323
19
DC1
SOFTWARE
G F:100 , HOH F:333 , HOH F:345 , HOH F:358 , HOH F:359 , HOH F:360
BINDING SITE FOR RESIDUE MG F 324
20
DC2
SOFTWARE
A F:108
BINDING SITE FOR RESIDUE MG F 325
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1feua_ (A:)
1b: SCOP_d1feud_ (D:)
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(
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Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Ribosomal protein L25-like
(72)
Superfamily
:
Ribosomal protein L25-like
(72)
Family
:
Ribosomal protein L25-like
(54)
Protein domain
:
Ribosomal protein TL5 (general stress protein CTC)
(22)
Thermus thermophilus [TaxId: 274]
(16)
1a
d1feua_
A:
1b
d1feud_
D:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1feuA01 (A:1-91)
1b: CATH_1feuD01 (D:1-91)
2a: CATH_1feuA02 (A:92-185)
2b: CATH_1feuD02 (D:92-185)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Ribosomal Protein L25; Chain P
(96)
Homologous Superfamily
:
Ribosomal Protein L25; Chain P
(89)
[unclassified]
(9)
1a
1feuA01
A:1-91
1b
1feuD01
D:1-91
Architecture
:
Beta Complex
(381)
Topology
:
RNA Polymerase Alpha Subunit; Chain A, domain 2
(118)
Homologous Superfamily
:
Ribosomal protein L25-like. Domain 2
(47)
[unclassified]
(1)
2a
1feuA02
A:92-185
2b
1feuD02
D:92-185
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Pfam Domains
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all PFAM domains
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Chain D
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Chain F
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (53 KB)
Header - Biol.Unit 1
Biol.Unit 2 (55 KB)
Header - Biol.Unit 2
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