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1FEU
Biol. Unit 1
Info
Asym.Unit (111 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5, ONE OF THE CTC FAMILY PROTEINS, COMPLEXED WITH A FRAGMENT OF 5S RRNA.
Authors
:
R. V. Fedorov, V. A. Meshcheryakov, G. M. Gongadze, N. P. Fomenkova, N. A. Nevskaya, M. Selmer, M. Laurberg, O. Kristensen, S. Al- Karadaghi, A. Liljas, M. B. Garber, S. V. Nikonov
Date
:
23 Jul 00 (Deposition) - 25 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
General Stress Protein Ctc, 5S Rrna-Protein Complex, Cadmium Ions, Ribosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Fedorov, V. Meshcheryakov, G. Gongadze, N. Fomenkova, N. Nevskaya, M. Selmer, M. Laurberg, O. Kristensen, S. Al-Karadaghi, A. Liljas, M. Garber, S. Nikonov
Structure Of Ribosomal Protein Tl5 Complexed With Rna Provides New Insights Into The Ctc Family Of Stress Proteins.
Acta Crystallogr. , Sect. D V. 57 968 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: BC1 (SOFTWARE)
09: BC5 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
13: CC1 (SOFTWARE)
14: CC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:54 , ASP A:123 , HOH A:305 , HOH A:306 , HOH A:307
BINDING SITE FOR RESIDUE CD A 296
02
AC2
SOFTWARE
MET A:1 , HIS A:55 , GLU A:135 , HOH A:342
BINDING SITE FOR RESIDUE CD A 297
03
AC3
SOFTWARE
HIS A:32 , SER A:92 , ASP A:93 , GLU A:94 , HOH A:304 , HOH A:308
BINDING SITE FOR RESIDUE CD A 298
04
AC4
SOFTWARE
SER A:149 , HIS A:151 , ASP A:154 , HOH D:434
BINDING SITE FOR RESIDUE CD A 299
05
AC5
SOFTWARE
HIS A:151 , HOH A:318 , ASP D:93 , HOH D:434 , HOH D:435
BINDING SITE FOR RESIDUE CD D 300
06
AC6
SOFTWARE
HIS A:121 , GLU A:169 , HOH A:309 , HOH A:313
BINDING SITE FOR RESIDUE CD A 301
07
AC7
SOFTWARE
HIS A:121 , ASP A:123 , HOH A:309 , HOH A:311
BINDING SITE FOR RESIDUE CD A 302
08
BC1
SOFTWARE
GLU A:168 , HIS D:32 , SER D:92 , GLU D:94 , HOH D:425
BINDING SITE FOR RESIDUE CD D 305
09
BC5
SOFTWARE
A C:109 , HOH C:319 , HOH C:320 , HOH F:326 , HOH F:344
BINDING SITE FOR RESIDUE MG C 309
10
BC7
SOFTWARE
HOH B:10 , HOH B:12 , HOH B:13 , HOH B:17 , HOH B:251
BINDING SITE FOR RESIDUE MG B 311
11
BC8
SOFTWARE
HOH C:340 , HOH C:341 , HOH C:342
BINDING SITE FOR RESIDUE MG C 312
12
BC9
SOFTWARE
U B:80 , HOH D:380 , A E:78 , A F:99
BINDING SITE FOR RESIDUE MG B 313
13
CC1
SOFTWARE
G C:100 , HOH C:343 , HOH C:344 , HOH C:345 , HOH C:346 , HOH C:347
BINDING SITE FOR RESIDUE MG C 314
14
CC5
SOFTWARE
C C:110
BINDING SITE FOR RESIDUE MG C 318
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1feua_ (A:)
1b: SCOP_d1feud_ (D:)
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Classes
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Ribosomal protein L25-like
(72)
Superfamily
:
Ribosomal protein L25-like
(72)
Family
:
Ribosomal protein L25-like
(54)
Protein domain
:
Ribosomal protein TL5 (general stress protein CTC)
(22)
Thermus thermophilus [TaxId: 274]
(16)
1a
d1feua_
A:
1b
d1feud_
D:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1feuA01 (A:1-91)
1b: CATH_1feuD01 (D:1-91)
2a: CATH_1feuA02 (A:92-185)
2b: CATH_1feuD02 (D:92-185)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Ribosomal Protein L25; Chain P
(96)
Homologous Superfamily
:
Ribosomal Protein L25; Chain P
(89)
[unclassified]
(9)
1a
1feuA01
A:1-91
1b
1feuD01
D:1-91
Architecture
:
Beta Complex
(381)
Topology
:
RNA Polymerase Alpha Subunit; Chain A, domain 2
(118)
Homologous Superfamily
:
Ribosomal protein L25-like. Domain 2
(47)
[unclassified]
(1)
2a
1feuA02
A:92-185
2b
1feuD02
D:92-185
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (53 KB)
Header - Biol.Unit 1
Biol.Unit 2 (55 KB)
Header - Biol.Unit 2
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