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1FEU
Asym. Unit
Info
Asym.Unit (111 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5, ONE OF THE CTC FAMILY PROTEINS, COMPLEXED WITH A FRAGMENT OF 5S RRNA.
Authors
:
R. V. Fedorov, V. A. Meshcheryakov, G. M. Gongadze, N. P. Fomenkova, N. A. Nevskaya, M. Selmer, M. Laurberg, O. Kristensen, S. Al- Karadaghi, A. Liljas, M. B. Garber, S. V. Nikonov
Date
:
23 Jul 00 (Deposition) - 25 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
General Stress Protein Ctc, 5S Rrna-Protein Complex, Cadmium Ions, Ribosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Fedorov, V. Meshcheryakov, G. Gongadze, N. Fomenkova, N. Nevskaya, M. Selmer, M. Laurberg, O. Kristensen, S. Al-Karadaghi, A. Liljas, M. Garber, S. Nikonov
Structure Of Ribosomal Protein Tl5 Complexed With Rna Provides New Insights Into The Ctc Family Of Stress Proteins.
Acta Crystallogr. , Sect. D V. 57 968 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 30)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
13
Ligand/Ion
CADMIUM ION
2
MG
17
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:54 , ASP A:123 , HOH A:305 , HOH A:306 , HOH A:307
BINDING SITE FOR RESIDUE CD A 296
02
AC2
SOFTWARE
MET A:1 , HIS A:55 , GLU A:135 , HOH A:342
BINDING SITE FOR RESIDUE CD A 297
03
AC3
SOFTWARE
HIS A:32 , SER A:92 , ASP A:93 , GLU A:94 , HOH A:304 , HOH A:308
BINDING SITE FOR RESIDUE CD A 298
04
AC4
SOFTWARE
SER A:149 , HIS A:151 , ASP A:154 , HOH D:434
BINDING SITE FOR RESIDUE CD A 299
05
AC5
SOFTWARE
HIS A:151 , HOH A:318 , ASP D:93 , HOH D:434 , HOH D:435
BINDING SITE FOR RESIDUE CD D 300
06
AC6
SOFTWARE
HIS A:121 , GLU A:169 , HOH A:309 , HOH A:313
BINDING SITE FOR RESIDUE CD A 301
07
AC7
SOFTWARE
HIS A:121 , ASP A:123 , HOH A:309 , HOH A:311
BINDING SITE FOR RESIDUE CD A 302
08
AC8
SOFTWARE
HIS D:54 , ASP D:123 , HOH D:323 , HOH D:324 , HOH D:325 , HOH D:343
BINDING SITE FOR RESIDUE CD D 303
09
AC9
SOFTWARE
MET D:1 , HIS D:55 , GLU D:135 , HOH D:443
BINDING SITE FOR RESIDUE CD D 304
10
BC1
SOFTWARE
GLU A:168 , HIS D:32 , SER D:92 , GLU D:94 , HOH D:425
BINDING SITE FOR RESIDUE CD D 305
11
BC2
SOFTWARE
HIS D:151 , ASP D:154
BINDING SITE FOR RESIDUE CD D 306
12
BC3
SOFTWARE
HIS D:121 , GLU D:169 , HOH D:336 , HOH D:355
BINDING SITE FOR RESIDUE CD D 307
13
BC4
SOFTWARE
HIS D:121 , ASP D:123 , HOH D:328 , HOH D:336
BINDING SITE FOR RESIDUE CD D 308
14
BC5
SOFTWARE
A C:109 , HOH C:319 , HOH C:320 , HOH F:326 , HOH F:344
BINDING SITE FOR RESIDUE MG C 309
15
BC6
SOFTWARE
ASP D:40 , HOH D:381 , HOH D:406 , HOH D:436
BINDING SITE FOR RESIDUE MG D 310
16
BC7
SOFTWARE
HOH B:10 , HOH B:12 , HOH B:13 , HOH B:17 , HOH B:251
BINDING SITE FOR RESIDUE MG B 311
17
BC8
SOFTWARE
HOH C:340 , HOH C:341 , HOH C:342
BINDING SITE FOR RESIDUE MG C 312
18
BC9
SOFTWARE
U B:80 , HOH D:380 , A E:78 , A F:99
BINDING SITE FOR RESIDUE MG B 313
19
CC1
SOFTWARE
G C:100 , HOH C:343 , HOH C:344 , HOH C:345 , HOH C:346 , HOH C:347
BINDING SITE FOR RESIDUE MG C 314
20
CC2
SOFTWARE
G E:75 , G E:76 , HOH E:331 , HOH E:348 , HOH E:349 , HOH F:357
BINDING SITE FOR RESIDUE MG E 315
21
CC3
SOFTWARE
U E:80 , HOH E:328 , HOH E:350 , U F:95 , G F:96 , HOH F:335
BINDING SITE FOR RESIDUE MG F 316
22
CC4
SOFTWARE
C F:97 , G F:98
BINDING SITE FOR RESIDUE MG F 317
23
CC5
SOFTWARE
C C:110
BINDING SITE FOR RESIDUE MG C 318
24
CC6
SOFTWARE
HOH D:437 , HOH E:351
BINDING SITE FOR RESIDUE MG D 319
25
CC7
SOFTWARE
GLU D:13 , HOH E:351 , A F:94
BINDING SITE FOR RESIDUE MG D 320
26
CC8
SOFTWARE
TYR D:38 , HOH D:375 , G E:83 , HOH E:351
BINDING SITE FOR RESIDUE MG E 321
27
CC9
SOFTWARE
C F:110 , HOH F:344
BINDING SITE FOR RESIDUE MG F 323
28
DC1
SOFTWARE
G F:100 , HOH F:333 , HOH F:345 , HOH F:358 , HOH F:359 , HOH F:360
BINDING SITE FOR RESIDUE MG F 324
29
DC2
SOFTWARE
A F:108
BINDING SITE FOR RESIDUE MG F 325
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1feua_ (A:)
1b: SCOP_d1feud_ (D:)
View:
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Ribosomal protein L25-like
(72)
Superfamily
:
Ribosomal protein L25-like
(72)
Family
:
Ribosomal protein L25-like
(54)
Protein domain
:
Ribosomal protein TL5 (general stress protein CTC)
(22)
Thermus thermophilus [TaxId: 274]
(16)
1a
d1feua_
A:
1b
d1feud_
D:
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1feuA01 (A:1-91)
1b: CATH_1feuD01 (D:1-91)
2a: CATH_1feuA02 (A:92-185)
2b: CATH_1feuD02 (D:92-185)
View:
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)
(
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Ribosomal Protein L25; Chain P
(96)
Homologous Superfamily
:
Ribosomal Protein L25; Chain P
(89)
[unclassified]
(9)
1a
1feuA01
A:1-91
1b
1feuD01
D:1-91
Architecture
:
Beta Complex
(381)
Topology
:
RNA Polymerase Alpha Subunit; Chain A, domain 2
(118)
Homologous Superfamily
:
Ribosomal protein L25-like. Domain 2
(47)
[unclassified]
(1)
2a
1feuA02
A:92-185
2b
1feuD02
D:92-185
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (111 KB)
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Biol.Unit 1 (53 KB)
Header - Biol.Unit 1
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