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1FCD
Biol. Unit 2
Info
Asym.Unit (193 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (95 KB)
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(1)
Title
:
THE STRUCTURE OF FLAVOCYTOCHROME C SULFIDE DEHYDROGENASE FROM A PURPLE PHOTOTROPHIC BACTERIUM CHROMATIUM VINOSUM AT 2.5 ANGSTROMS RESOLUTION
Authors
:
Z. W. Chen, M. Koh, G. Van Driessche, J. J. Van Beeumen, R. G. Bartsch, T. E. Meyer, M. A. Cusanovich, F. S. Mathews
Date
:
18 Aug 94 (Deposition) - 01 Nov 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.53
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Electron Transport(Flavocytochrome)
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. W. Chen, M. Koh, G. Van Driessche, J. J. Van Beeumen, R. G. Bartsch, T. E. Meyer, M. A. Cusanovich, F. S. Mathews
The Structure Of Flavocytochrome C Sulfide Dehydrogenase From A Purple Phototrophic Bacterium.
Science V. 266 430 1994
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(3, 3)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
VAL B:8 , GLY B:9 , GLY B:11 , THR B:12 , GLY B:13 , ILE B:33 , GLU B:34 , PRO B:35 , TYR B:39 , CYS B:42 , TYR B:43 , ASN B:46 , ALA B:77 , ALA B:103 , PRO B:104 , GLY B:105 , ARG B:160 , CYS B:161 , GLY B:293 , ASP B:294 , LYS B:303 , SER B:304 , GLY B:305 , TYR B:306 , TYR B:338 , TRP B:391
BINDING SITE FOR RESIDUE FAD B 699
2
AC5
SOFTWARE
TYR B:306 , LEU B:334 , THR B:336 , TYR B:387 , CYS D:11 , CYS D:14 , HIS D:15 , ILE D:29 , MET D:32 , PHE D:37 , MET D:41 , PHE D:44 , SER D:51 , THR D:52 , ILE D:53 , MET D:54 , ILE D:57 , TYR D:61 , TYR D:128 , HEM D:902
BINDING SITE FOR RESIDUE HEM D 901
3
AC6
SOFTWARE
TYR D:100 , CYS D:101 , LYS D:103 , CYS D:104 , HIS D:105 , HIS D:119 , TYR D:128 , MET D:133 , PHE D:136 , ARG D:141 , PRO D:142 , GLU D:144 , LYS D:146 , MET D:147 , HEM D:901
BINDING SITE FOR RESIDUE HEM D 902
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTC (D:88-174)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
CYSD_ALLVD
23-102
113-199
1
-
-
D:88-174
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 10)
Info
All SCOP Domains
1a: SCOP_d1fcdc1 (C:1-80)
1b: SCOP_d1fcdc2 (C:81-174)
1c: SCOP_d1fcdd1 (D:1-80)
1d: SCOP_d1fcdd2 (D:81-174)
2a: SCOP_d1fcda3 (A:328-401)
2b: SCOP_d1fcdb3 (B:328-401)
3a: SCOP_d1fcda1 (A:1-114,A:256-327)
3b: SCOP_d1fcda2 (A:115-255)
3c: SCOP_d1fcdb1 (B:1-114,B:256-327)
3d: SCOP_d1fcdb2 (B:115-255)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
Two-domain cytochrome c
(6)
Protein domain
:
Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
(1)
Chromatium vinosum [TaxId: 1049]
(1)
1a
d1fcdc1
C:1-80
1b
d1fcdc2
C:81-174
1c
d1fcdd1
D:1-80
1d
d1fcdd2
D:81-174
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Family
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Protein domain
:
Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
(1)
Chromatium vinosum [TaxId: 1049]
(1)
2a
d1fcda3
A:328-401
2b
d1fcdb3
B:328-401
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
(1)
Chromatium vinosum [TaxId: 1049]
(1)
3a
d1fcda1
A:1-114,A:256-327
3b
d1fcda2
A:115-255
3c
d1fcdb1
B:1-114,B:256-327
3d
d1fcdb2
B:115-255
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CATH Domains
(3, 10)
Info
all CATH domains
1a: CATH_1fcdA01 (A:1-116,A:256-327)
1b: CATH_1fcdB01 (B:1-116,B:256-327)
1c: CATH_1fcdA02 (A:117-255)
1d: CATH_1fcdB02 (B:117-255)
2a: CATH_1fcdA03 (A:328-401)
2b: CATH_1fcdB03 (B:328-401)
3a: CATH_1fcdC02 (C:79-174)
3b: CATH_1fcdD02 (D:79-174)
3c: CATH_1fcdC01 (C:1-78)
3d: CATH_1fcdD01 (D:1-78)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Allochromatium vinosum. Organism_taxid: 1049.
(1)
1a
1fcdA01
A:1-116,A:256-327
1b
1fcdB01
B:1-116,B:256-327
1c
1fcdA02
A:117-255
1d
1fcdB02
B:117-255
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3
(1)
Homologous Superfamily
:
Flavocytochrome C Sulfide Dehydrogenase, Chain A Domain 3
(1)
Allochromatium vinosum. Organism_taxid: 1049.
(1)
2a
1fcdA03
A:328-401
2b
1fcdB03
B:328-401
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Allochromatium vinosum. Organism_taxid: 1049.
(1)
3a
1fcdC02
C:79-174
3b
1fcdD02
D:79-174
3c
1fcdC01
C:1-78
3d
1fcdD01
D:1-78
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (193 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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