PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1FB1
Asym. Unit
Info
Asym.Unit (165 KB)
Biol.Unit 1 (313 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GTP CYCLOHYDROLASE I
Authors
:
G. Auerbach, A. Herrmann, A. Bracher, G. Bader, M. Gutlich, M. Fischer, M. Neukamm, H. Nar, M. Garrido-Franco, J. Richardson, R. Huber, A. Bac
Date
:
14 Jul 00 (Deposition) - 08 Dec 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Keywords
:
Hydrolase, Allosteric Enzyme, Phosphorylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Auerbach, A. Herrmann, A. Bracher, G. Bader, M. Gutlich, M. Fischer M. Neukamm, M. Garrido-Franco, J. Richardson, H. Nar, R. Huber, A. Bacher
Zinc Plays A Key Role In Human And Bacterial Gtp Cyclohydrolase I.
Proc. Natl. Acad. Sci. Usa V. 97 13567 2000
[
close entry info
]
Hetero Components
(2, 10)
Info
All Hetero Components
1a: ISOPROPYL ALCOHOL (IPAa)
1b: ISOPROPYL ALCOHOL (IPAb)
1c: ISOPROPYL ALCOHOL (IPAc)
1d: ISOPROPYL ALCOHOL (IPAd)
1e: ISOPROPYL ALCOHOL (IPAe)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IPA
5
Ligand/Ion
ISOPROPYL ALCOHOL
2
ZN
5
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:141 , HIS A:144 , CYS A:212 , IPA B:302
BINDING SITE FOR RESIDUE ZN A 300
02
AC2
SOFTWARE
CYS B:141 , HIS B:144 , CYS B:212 , IPA B:303
BINDING SITE FOR RESIDUE ZN B 300
03
AC3
SOFTWARE
CYS C:141 , HIS C:144 , CYS C:212 , IPA D:304
BINDING SITE FOR RESIDUE ZN C 300
04
AC4
SOFTWARE
CYS D:141 , HIS D:144 , CYS D:212 , IPA D:305
BINDING SITE FOR RESIDUE ZN D 300
05
AC5
SOFTWARE
IPA A:306 , CYS E:141 , HIS E:144 , CYS E:212
BINDING SITE FOR RESIDUE ZN E 300
06
AC6
SOFTWARE
HIS A:144 , ZN A:300 , GLY B:164 , LEU B:165
BINDING SITE FOR RESIDUE IPA B 302
07
AC7
SOFTWARE
CYS B:141 , HIS B:143 , HIS B:144 , ZN B:300 , LEU C:165 , SER C:166
BINDING SITE FOR RESIDUE IPA B 303
08
AC8
SOFTWARE
HIS C:143 , HIS C:144 , ZN C:300 , GLY D:164 , LEU D:165 , SER D:166
BINDING SITE FOR RESIDUE IPA D 304
09
AC9
SOFTWARE
HIS D:143 , ZN D:300 , SER E:166
BINDING SITE FOR RESIDUE IPA D 305
10
BC1
SOFTWARE
LEU A:165 , SER A:166 , CYS E:141 , HIS E:143 , HIS E:144 , ZN E:300
BINDING SITE FOR RESIDUE IPA A 306
[
close Site info
]
SAPs(SNPs)/Variants
(39, 195)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_016888 (L71Q, chain A/B/C/D/E, )
02: VAR_016889 (A74V, chain A/B/C/D/E, )
03: VAR_072733 (Y75C, chain A/B/C/D/E, )
04: VAR_002634 (L79P, chain A/B/C/D/E, )
05: VAR_016890 (G83A, chain A/B/C/D/E, )
06: VAR_002635 (R88P, chain A/B/C/D/E, )
07: VAR_002636 (R88W, chain A/B/C/D/E, )
08: VAR_016892 (G90V, chain A/B/C/D/E, )
09: VAR_072734 (A98V, chain A/B/C/D/E, )
10: VAR_002637 (M102K, chain A/B/C/D/E, )
11: VAR_016893 (M102R, chain A/B/C/D/E, )
12: VAR_054112 (T106I, chain A/B/C/D/E, )
13: VAR_016894 (G108D, chain A/B/C/D/E, )
14: VAR_016895 (D115N, chain A/B/C/D/E, )
15: VAR_002638 (D134V, chain A/B/C/D/E, )
16: VAR_016896 (I135K, chain A/B/C/D/E, )
17: VAR_072735 (I135T, chain A/B/C/D/E, )
18: VAR_016897 (C141R, chain A/B/C/D/E, )
19: VAR_002639 (C141W, chain A/B/C/D/E, )
20: VAR_002640 (H144P, chain A/B/C/D/E, )
21: VAR_002641 (H153P, chain A/B/C/D/E, )
22: VAR_016898 (L163R, chain A/B/C/D/E, )
23: VAR_016899 (S176T, chain A/B/C/D/E, )
24: VAR_002642 (R178S, chain A/B/C/D/E, )
25: VAR_016900 (Q180R, chain A/B/C/D/E, )
26: VAR_002643 (R184H, chain A/B/C/D/E, )
27: VAR_002644 (T186K, chain A/B/C/D/E, )
28: VAR_016901 (V191I, chain A/B/C/D/E, )
29: VAR_016902 (P199L, chain A/B/C/D/E, )
30: VAR_002645 (G201E, chain A/B/C/D/E, )
31: VAR_002646 (G203R, chain A/B/C/D/E, )
32: VAR_002647 (M211I, chain A/B/C/D/E, )
33: VAR_016903 (M211V, chain A/B/C/D/E, )
34: VAR_016904 (M213V, chain A/B/C/D/E, )
35: VAR_016905 (M221T, chain A/B/C/D/E, )
36: VAR_002648 (K224R, chain A/B/C/D/E, )
37: VAR_002649 (F234S, chain A/B/C/D/E, )
38: VAR_016906 (R241W, chain A/B/C/D/E, )
39: VAR_016907 (R249S, chain A/B/C/D/E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_016888
L
71
Q
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
L
71
Q
02
UniProt
VAR_016889
A
74
V
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
A
74
V
03
UniProt
VAR_072733
Y
75
C
GCH1_HUMAN
Unclassified
---
A/B/C/D/E
Y
75
C
04
UniProt
VAR_002634
L
79
P
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
L
79
P
05
UniProt
VAR_016890
G
83
A
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
G
83
A
06
UniProt
VAR_002635
R
88
P
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
R
88
P
07
UniProt
VAR_002636
R
88
W
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
R
88
W
08
UniProt
VAR_016892
G
90
V
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
G
90
V
09
UniProt
VAR_072734
A
98
V
GCH1_HUMAN
Polymorphism
---
A/B/C/D/E
A
98
V
10
UniProt
VAR_002637
M
102
K
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
M
102
K
11
UniProt
VAR_016893
M
102
R
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
M
102
R
12
UniProt
VAR_054112
T
106
I
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
T
106
I
13
UniProt
VAR_016894
G
108
D
GCH1_HUMAN
Disease (HPABH4B)
---
A/B/C/D/E
G
108
D
14
UniProt
VAR_016895
D
115
N
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
D
115
N
15
UniProt
VAR_002638
D
134
V
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
D
134
V
16
UniProt
VAR_016896
I
135
K
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
I
135
K
17
UniProt
VAR_072735
I
135
T
GCH1_HUMAN
Polymorphism
---
A/B/C/D/E
I
135
T
18
UniProt
VAR_016897
C
141
R
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
C
141
R
19
UniProt
VAR_002639
C
141
W
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
C
141
W
20
UniProt
VAR_002640
H
144
P
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
H
144
P
21
UniProt
VAR_002641
H
153
P
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
H
153
P
22
UniProt
VAR_016898
L
163
R
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
L
163
R
23
UniProt
VAR_016899
S
176
T
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
S
176
T
24
UniProt
VAR_002642
R
178
S
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
R
178
S
25
UniProt
VAR_016900
Q
180
R
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
Q
180
R
26
UniProt
VAR_002643
R
184
H
GCH1_HUMAN
Disease (HPABH4B)
---
A/B/C/D/E
R
184
H
27
UniProt
VAR_002644
T
186
K
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
T
186
K
28
UniProt
VAR_016901
V
191
I
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
V
191
I
29
UniProt
VAR_016902
P
199
L
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
P
199
L
30
UniProt
VAR_002645
G
201
E
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
G
201
E
31
UniProt
VAR_002646
G
203
R
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
G
203
R
32
UniProt
VAR_002647
M
211
I
GCH1_HUMAN
Disease (HPABH4B)
---
A/B/C/D/E
M
211
I
33
UniProt
VAR_016903
M
211
V
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
M
211
V
34
UniProt
VAR_016904
M
213
V
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
M
213
V
35
UniProt
VAR_016905
M
221
T
GCH1_HUMAN
Disease (HPABH4B)
---
A/B/C/D/E
M
221
T
36
UniProt
VAR_002648
K
224
R
GCH1_HUMAN
Disease (HPABH4B)
41298442
A/B/C/D/E
K
224
R
37
UniProt
VAR_002649
F
234
S
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
F
234
S
38
UniProt
VAR_016906
R
241
W
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
R
241
W
39
UniProt
VAR_016907
R
249
S
GCH1_HUMAN
Disease (DRD)
---
A/B/C/D/E
R
249
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 10)
Info
All PROSITE Patterns/Profiles
1: GTP_CYCLOHYDROL_1_1 (A:128-144,B:128-144,C:128-144,D:12...)
2: GTP_CYCLOHYDROL_1_2 (A:176-186,B:176-186,C:176-186,D:17...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GTP_CYCLOHYDROL_1_1
PS00859
GTP cyclohydrolase I signature 1.
GCH1_HUMAN
128-144
5
A:128-144
B:128-144
C:128-144
D:128-144
E:128-144
2
GTP_CYCLOHYDROL_1_2
PS00860
GTP cyclohydrolase I signature 2.
GCH1_HUMAN
176-186
5
A:176-186
B:176-186
C:176-186
D:176-186
E:176-186
[
close PROSITE info
]
Exons
(6, 30)
Info
All Exons
Exon 1.1a (A:55-115 | B:55-115 | C:55-115 | D...)
Exon 1.2 (A:115-151 | B:115-151 | C:115-151 ...)
Exon 1.3 (A:152-170 | B:152-170 | C:152-170 ...)
Exon 1.4 (A:170-181 | B:170-181 | C:170-181 ...)
Exon 1.5 (A:181-209 | B:181-209 | C:181-209 ...)
Exon 1.6a (A:209-250 | B:209-250 | C:209-250 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6a
7: Boundary 1.6a/1.6i
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000395514
1a
ENSE00001422408
chr14:
55369542-55369039
504
GCH1_HUMAN
1-115
115
5
A:55-115
B:55-115
C:55-115
D:55-115
E:55-115
61
61
61
61
61
1.2
ENST00000395514
2
ENSE00002116481
chr14:
55332154-55332045
110
GCH1_HUMAN
115-151
37
5
A:115-151
B:115-151
C:115-151
D:115-151
E:115-151
37
37
37
37
37
1.3
ENST00000395514
3
ENSE00002114531
chr14:
55326454-55326399
56
GCH1_HUMAN
152-170
19
5
A:152-170
B:152-170
C:152-170
D:152-170
E:152-170
19
19
19
19
19
1.4
ENST00000395514
4
ENSE00002112000
chr14:
55313848-55313817
32
GCH1_HUMAN
170-181
12
5
A:170-181
B:170-181
C:170-181
D:170-181
E:170-181
12
12
12
12
12
1.5
ENST00000395514
5
ENSE00002094689
chr14:
55312570-55312486
85
GCH1_HUMAN
181-209
29
5
A:181-209
B:181-209
C:181-209
D:181-209
E:181-209
29
29
29
29
29
1.6a
ENST00000395514
6a
ENSE00001521926
chr14:
55310861-55310719
143
GCH1_HUMAN
209-250
42
5
A:209-250
B:209-250
C:209-250
D:209-250
E:209-250
42
42
42
42
42
1.6i
ENST00000395514
6i
ENSE00001634596
chr14:
55309772-55308726
1047
GCH1_HUMAN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d1fb1a_ (A:)
1b: SCOP_d1fb1b_ (B:)
1c: SCOP_d1fb1c_ (C:)
1d: SCOP_d1fb1d_ (D:)
1e: SCOP_d1fb1e_ (E:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
T-fold
(116)
Superfamily
:
Tetrahydrobiopterin biosynthesis enzymes-like
(113)
Family
:
GTP cyclohydrolase I
(15)
Protein domain
:
GTP cyclohydrolase I
(14)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1fb1a_
A:
1b
d1fb1b_
B:
1c
d1fb1c_
C:
1d
d1fb1d_
D:
1e
d1fb1e_
E:
[
close SCOP info
]
CATH Domains
(2, 10)
Info
all CATH domains
1a: CATH_1fb1A02 (A:117-250)
1b: CATH_1fb1B02 (B:117-250)
1c: CATH_1fb1C02 (C:117-250)
1d: CATH_1fb1D02 (D:117-250)
1e: CATH_1fb1E02 (E:117-250)
2a: CATH_1fb1A01 (A:57-116)
2b: CATH_1fb1B01 (B:57-116)
2c: CATH_1fb1C01 (C:57-116)
2d: CATH_1fb1D01 (D:57-116)
2e: CATH_1fb1E01 (E:57-116)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GTP Cyclohydrolase I, domain 2
(31)
Homologous Superfamily
:
[code=3.30.1130.10, no name defined]
(31)
Human (Homo sapiens)
(1)
1a
1fb1A02
A:117-250
1b
1fb1B02
B:117-250
1c
1fb1C02
C:117-250
1d
1fb1D02
D:117-250
1e
1fb1E02
E:117-250
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GTP Cyclohydrolase I; Chain A, domain 1
(23)
Homologous Superfamily
:
[code=1.10.286.10, no name defined]
(14)
Human (Homo sapiens)
(1)
2a
1fb1A01
A:57-116
2b
1fb1B01
B:57-116
2c
1fb1C01
C:57-116
2d
1fb1D01
D:57-116
2e
1fb1E01
E:57-116
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (165 KB)
Header - Asym.Unit
Biol.Unit 1 (313 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1FB1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
