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1EX4
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 10 (139 KB)
Biol.Unit 2 (411 KB)
Biol.Unit 3 (409 KB)
Biol.Unit 4 (412 KB)
Biol.Unit 5 (410 KB)
Biol.Unit 6 (207 KB)
Biol.Unit 7 (139 KB)
Biol.Unit 8 (138 KB)
Biol.Unit 9 (139 KB)
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(1)
Title
:
HIV-1 INTEGRASE CATALYTIC CORE AND C-TERMINAL DOMAIN
Authors
:
J. C. -H. Chen, J. Krucinski, L. J. W. Miercke, J. S. Finer-Moore, A. H. Ta A. D. Leavitt, R. M. Stroud
Date
:
28 Apr 00 (Deposition) - 07 Jun 00 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (6x)
Biol. Unit 3: A,B (6x)
Biol. Unit 4: A,B (6x)
Biol. Unit 5: A,B (6x)
Biol. Unit 6: A,B (3x)
Biol. Unit 7: A,B (2x)
Biol. Unit 8: A,B (2x)
Biol. Unit 9: A,B (2x)
Biol. Unit 10: A,B (2x)
Keywords
:
Sh3-Like Domain, Nonspecific Dna Binding Beta Sheet, Cis-Proline, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Chen, J. Krucinski, L. J. Miercke, J. S. Finer-Moore, A. H. Tang, A. D. Leavitt, R. M. Stroud
Crystal Structure Of The Hiv-1 Integrase Catalytic Core And C-Terminal Domains: A Model For Viral Dna Binding.
Proc. Natl. Acad. Sci. Usa V. 97 8233 2000
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSa)
1b: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSb)
1c: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSc)
1d: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CPS
4
Ligand/Ion
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR B:226 , TRP B:235
BINDING SITE FOR RESIDUE CPS B 301
2
AC2
SOFTWARE
TYR A:226 , TRP A:235 , LYS A:266 , ILE A:268 , ARG A:269 , GLU B:246 , HOH B:315 , HOH B:330 , HOH B:332
BINDING SITE FOR RESIDUE CPS A 302
3
AC3
SOFTWARE
LYS A:266 , ARG A:269 , GLN B:216 , ILE B:217 , ILE B:220 , PHE B:223 , LEU B:242 , TRP B:243 , LYS B:244 , ILE B:267 , HOH B:313 , HOH B:318 , HOH B:332
BINDING SITE FOR RESIDUE CPS B 303
4
AC4
SOFTWARE
LEU A:213 , GLN A:216 , ILE A:217 , LEU A:242 , TRP A:243
BINDING SITE FOR RESIDUE CPS A 304
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: INTEGRASE_DBD (A:223-270,B:223-270)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTEGRASE_DBD
PS51027
Integrase DNA binding domain profile.
POL_HV1H2
1370-1417
2
A:223-270
B:223-270
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1ex4a1 (A:223-270)
1b: SCOP_d1ex4b1 (B:223-270)
2a: SCOP_d1ex4a2 (A:56-222)
2b: SCOP_d1ex4b2 (B:55-222)
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Protein Domains
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(
)
Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
DNA-binding domain of retroviral integrase
(9)
Family
:
DNA-binding domain of retroviral integrase
(7)
Protein domain
:
DNA-binding domain of retroviral integrase
(7)
Human immunodeficiency virus type 1 [TaxId: 11676]
(4)
1a
d1ex4a1
A:223-270
1b
d1ex4b1
B:223-270
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Retroviral integrase, catalytic domain
(152)
Protein domain
:
Retroviral integrase, catalytic domain
(62)
Human immunodeficiency virus type 1 [TaxId: 11676]
(38)
2a
d1ex4a2
A:56-222
2b
d1ex4b2
B:55-222
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ex4A01 (A:56-210)
1b: CATH_1ex4B01 (B:56-210)
2a: CATH_1ex4B02 (B:211-269)
2b: CATH_1ex4A02 (A:211-270)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Human immunodeficiency virus 1. Organism_taxid: 11676.
(17)
1a
1ex4A01
A:56-210
1b
1ex4B01
B:56-210
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.10, no name defined]
(7)
Human immunodeficiency virus 1. Organism_taxid: 11676.
(3)
2a
1ex4B02
B:211-269
2b
1ex4A02
A:211-270
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (77 KB)
Header - Asym.Unit
Biol.Unit 1 (71 KB)
Header - Biol.Unit 1
Biol.Unit 10 (139 KB)
Header - Biol.Unit 10
Biol.Unit 2 (411 KB)
Header - Biol.Unit 2
Biol.Unit 3 (409 KB)
Header - Biol.Unit 3
Biol.Unit 4 (412 KB)
Header - Biol.Unit 4
Biol.Unit 5 (410 KB)
Header - Biol.Unit 5
Biol.Unit 6 (207 KB)
Header - Biol.Unit 6
Biol.Unit 7 (139 KB)
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Biol.Unit 8 (138 KB)
Header - Biol.Unit 8
Biol.Unit 9 (139 KB)
Header - Biol.Unit 9
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