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1EVJ
Biol. Unit 2
Info
Asym.Unit (214 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE (GFOR) DELTA1-22 S64D
Authors
:
J. S. Lott, D. Halbig, H. M. Baker, M. J. Hardman, G. A. Sprenger, E. N. Baker
Date
:
20 Apr 00 (Deposition) - 04 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Nadp/Nad Binding, Osmotic Protection, Periplasm, Oligomerization State, N-Terminal Arm, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. S. Lott, D. Halbig, H. M. Baker, M. J. Hardman, G. A. Sprenger, E. N. Baker
Crystal Structure Of A Truncated Mutant Of Glucose-Fructose Oxidoreductase Shows That An N-Terminal Arm Controls Tetramer Formation.
J. Mol. Biol. V. 304 575 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
1c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
1d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
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No.
Name
Count
Type
Full Name
1
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(2, 2)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
GLY B:38 , LEU B:39 , GLY B:40 , LYS B:41 , TYR B:42 , ASP B:64 , TYR B:87 , ILE B:105 , LEU B:106 , PRO B:107 , ASN B:108 , HIS B:111 , GLU B:128 , LYS B:129 , ARG B:157 , TRP B:199 , ARG B:200 , TYR B:217 , TYR B:296 , HOH B:600 , HOH B:638 , HOH B:675
BINDING SITE FOR RESIDUE NAD B 501
2
AC4
SOFTWARE
GLY D:38 , LEU D:39 , GLY D:40 , LYS D:41 , TYR D:42 , ASP D:64 , TYR D:87 , ILE D:105 , LEU D:106 , PRO D:107 , ASN D:108 , HIS D:111 , GLU D:128 , LYS D:129 , ARG D:157 , TRP D:199 , ARG D:200 , TYR D:217 , TYR D:296 , HOH D:651 , HOH D:652 , HOH D:661
BINDING SITE FOR RESIDUE NAD D 503
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1evja2 (A:161-322)
1b: SCOP_d1evjb2 (B:161-322)
1c: SCOP_d1evjc2 (C:161-322)
1d: SCOP_d1evjd2 (D:161-322)
2a: SCOP_d1evja1 (A:30-160,A:323-381)
2b: SCOP_d1evjb1 (B:30-160,B:323-381)
2c: SCOP_d1evjc1 (C:30-160,C:323-381)
2d: SCOP_d1evjd1 (D:30-160,D:323-381)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
Glucose 6-phosphate dehydrogenase-like
(25)
Protein domain
:
Glucose-fructose oxidoreductase
(8)
Zymomonas mobilis [TaxId: 542]
(8)
1a
d1evja2
A:161-322
1b
d1evjb2
B:161-322
1c
d1evjc2
C:161-322
1d
d1evjd2
D:161-322
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Glucose-fructose oxidoreductase, N-terminal domain
(8)
Zymomonas mobilis [TaxId: 542]
(8)
2a
d1evja1
A:30-160,A:323-381
2b
d1evjb1
B:30-160,B:323-381
2c
d1evjc1
C:30-160,C:323-381
2d
d1evjd1
D:30-160,D:323-381
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1evjB02 (B:161-320,B:346-380)
1b: CATH_1evjA02 (A:161-306,A:346-381)
1c: CATH_1evjC02 (C:161-321,C:346-380)
1d: CATH_1evjD02 (D:161-322,D:346-380)
2a: CATH_1evjA01 (A:30-160,A:319-345)
2b: CATH_1evjB01 (B:30-160,B:321-345)
2c: CATH_1evjC01 (C:30-160,C:322-345)
2d: CATH_1evjD01 (D:30-160,D:323-345)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Zymomonas mobilis. Organism_taxid: 542.
(7)
1a
1evjB02
B:161-320,B:346-380
1b
1evjA02
A:161-306,A:346-381
1c
1evjC02
C:161-321,C:346-380
1d
1evjD02
D:161-322,D:346-380
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Zymomonas mobilis. Organism_taxid: 542.
(7)
2a
1evjA01
A:30-160,A:319-345
2b
1evjB01
B:30-160,B:321-345
2c
1evjC01
C:30-160,C:322-345
2d
1evjD01
D:30-160,D:323-345
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (214 KB)
Header - Asym.Unit
Biol.Unit 1 (107 KB)
Header - Biol.Unit 1
Biol.Unit 2 (104 KB)
Header - Biol.Unit 2
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