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Biol.Unit 1 (30 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN MONOCYTE CHEMOTACTIC PROTEIN-2
Authors
:
J. Blaszczyk, X. Ji
Date
:
10 Apr 00 (Deposition) - 06 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Cytokine, Chemokine, Monocyte Chemoattractant Protein, Hiv- 1, Pyroglutamic Acid, X-Ray Crystallography
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Blaszczyk, E. V. Coillie, P. Proost, J. V. Damme, G. Opdenakker, G. D. Bujacz, J. M. Wang, X. Ji
Complete Crystal Structure Of Monocyte Chemotactic Protein-2, A Cc Chemokine That Interacts With Multiple Receptors.
Biochemistry V. 39 14075 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PYROGLUTAMIC ACID (PCAa)
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No.
Name
Count
Type
Full Name
1
PCA
1
Mod. Amino Acid
PYROGLUTAMIC ACID
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_001633 (Q46Q, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_001633
K
69
Q
CCL8_HUMAN
Polymorphism
1133763
A
Q
46
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
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1: SMALL_CYTOKINES_CC (A:11-53)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SMALL_CYTOKINES_CC
PS00472
Small cytokines (intercrine/chemokine) C-C subfamily signature.
CCL8_HUMAN
34-76
1
A:11-53
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Exons
(3, 3)
Info
All Exons
Exon 1.1 (A:1-13)
Exon 1.2 (A:13-52)
Exon 1.3b (A:52-76)
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3b
4: Boundary 1.3b/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000394620
1
ENSE00001244557
chr17:
32646055-32646596
542
CCL8_HUMAN
1-36
36
1
A:1-13
13
1.2
ENST00000394620
2
ENSE00000713724
chr17:
32647288-32647405
118
CCL8_HUMAN
36-75
40
1
A:13-52
40
1.3b
ENST00000394620
3b
ENSE00001519013
chr17:
32647821-32648421
601
CCL8_HUMAN
75-109
35
1
A:52-76
25
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SCOP Domains
(1, 1)
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1a: SCOP_d1esra_ (A:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IL8-like
(118)
Superfamily
:
Interleukin 8-like chemokines
(117)
Family
:
Interleukin 8-like chemokines
(113)
Protein domain
:
Monocyte chemoattractant protein-2 (MCP-2)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1esra_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1esrA00 (A:2-76)
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)
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)
Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.40, no name defined]
(161)
Human (Homo sapiens)
(86)
1a
1esrA00
A:2-76
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Pfam Domains
(0, 0)
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