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1EJ6
Asym. Unit
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Asym.Unit (685 KB)
Biol.Unit 1, α-C (38.6 MB)
Biol.Unit 1 (38.6 MB)
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(1)
Title
:
REOVIRUS CORE
Authors
:
K. M. Reinisch, M. L. Nibert, S. C. Harrison
Date
:
29 Feb 00 (Deposition) - 12 Jul 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (60x)
Keywords
:
Virus, Icosahedral, Non-Equivalence, Dsrna Virus, Methylase, Methyltransferase, Guanylyltransferase, Zinc Finger, Icosahedral Virus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. M. Reinisch, M. L. Nibert, S. C. Harrison
Structure Of The Reovirus Core At 3. 6 A Resolution.
Nature V. 404 960 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS C:183 , CYS C:186 , HIS C:199 , HIS C:203
BINDING SITE FOR RESIDUE ZN C 2000
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_SIGM2_REOVD_001 (A188V, chain D/E, )
2: VAR_SIGM2_REOVD_002 (A323V, chain D/E, )
3: VAR_SIGM2_REOVD_003 (N383D, chain D/E, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_SIGM2_REOVD_001
*
A
188
V
SIGM2_REOVD
---
---
D/E
A
188
V
2
UniProt
VAR_SIGM2_REOVD_002
*
A
323
V
SIGM2_REOVD
---
---
D/E
A
323
V
3
UniProt
VAR_SIGM2_REOVD_003
*
N
383
D
SIGM2_REOVD
---
---
D/E
N
383
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_FINGER_C2H2_1 (C:183-203)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
LMBD1_REOVD
183-203
1
C:183-203
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d1ej6a_ (A:)
1b: SCOP_d1ej6b_ (B:)
1c: SCOP_d1ej6c_ (C:)
1d: SCOP_d1ej6d_ (D:)
1e: SCOP_d1ej6e_ (E:)
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Organisms
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Class
:
Low resolution protein structures
(283)
Fold
:
Reovirus components
(3)
Superfamily
:
Reovirus components
(3)
Family
:
Reovirus components
(3)
Protein domain
:
Reovirus core
(1)
Reovirus sp. [TaxId: 10891]
(1)
1a
d1ej6a_
A:
1b
d1ej6b_
B:
1c
d1ej6c_
C:
1d
d1ej6d_
D:
1e
d1ej6e_
E:
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1ej6A03 (A:428-690)
2a: CATH_1ej6A04 (A:797-1026)
3a: CATH_1ej6A05 (A:1027-1121)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Reovirus core
(1)
Reovirus sp.. Organism_taxid: 10891. Strain: reassortant f18. Reovirussp.. Organism_taxid: 10891. Strain: reassortant f18.
(1)
1a
1ej6A03
A:428-690
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Reovirus sp.. Organism_taxid: 10891. Strain: reassortant f18. Reovirussp.. Organism_taxid: 10891. Strain: reassortant f18.
(1)
2a
1ej6A04
A:797-1026
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Reovirus sp.. Organism_taxid: 10891. Strain: reassortant f18. Reovirussp.. Organism_taxid: 10891. Strain: reassortant f18.
(1)
3a
1ej6A05
A:1027-1121
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (685 KB)
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Biol.Unit 1 (38.6 MB)
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