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1EFW
Biol. Unit 1
Info
Asym.Unit (263 KB)
Biol.Unit 1 (129 KB)
Biol.Unit 2 (129 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ASPARTYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED TO TRNAASP FROM ESCHERICHIA COLI
Authors
:
C. Briand, A. Poterszman, S. Eiler, G. Webster, J. -C. Thierry, D. Moras
Date
:
10 Feb 00 (Deposition) - 19 Jun 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Aspartyl-Trna Synthetase, Trna, Protein/Rna Complex, Ligase/Rna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Briand, A. Poterszman, S. Eiler, G. Webster, J. Thierry, D. Moras
An Intermediate Step In The Recognition Of Trna(Asp) By Aspartyl-Trna Synthetase.
J. Mol. Biol. V. 299 1051 2000
(for further references see the
PDB file header
)
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Hetero Components
(7, 10)
Info
All Hetero Components
1a: 2-METHYLADENOSINE-5'-MONOPHOSPHATE (2MAa)
1b: 2-METHYLADENOSINE-5'-MONOPHOSPHATE (2MAb)
2a: 4-THIOURIDINE-5'-MONOPHOSPHATE (4SUa)
2b: 4-THIOURIDINE-5'-MONOPHOSPHATE (4SUb)
3a: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUa)
3b: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUb)
4a: N7-METHYL-GUANOSINE-5'-MONOPHOSPHA... (G7Ma)
4b: N7-METHYL-GUANOSINE-5'-MONOPHOSPHA... (G7Mb)
5a: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ua)
5b: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ub)
5c: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Uc)
5d: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ud)
5e: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ue)
5f: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Uf)
6a: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUa)
6b: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUb)
6c: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUc)
6d: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUd)
7a: 2-AMINO-7-DEAZA-(2'',3''-DIHYDROXY... (QUOa)
7b: 2-AMINO-7-DEAZA-(2'',3''-DIHYDROXY... (QUOb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
2MA
1
Mod. Nucleotide
2-METHYLADENOSINE-5'-MONOPHOSPHATE
2
4SU
1
Mod. Nucleotide
4-THIOURIDINE-5'-MONOPHOSPHATE
3
5MU
1
Mod. Nucleotide
5-METHYLURIDINE 5'-MONOPHOSPHATE
4
G7M
1
Mod. Nucleotide
N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE
5
H2U
3
Mod. Nucleotide
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
6
PSU
2
Mod. Nucleotide
PSEUDOURIDINE-5'-MONOPHOSPHATE
7
QUO
1
Mod. Nucleotide
2-AMINO-7-DEAZA-(2'',3''-DIHYDROXY-CYCLOPENTYLAMINO)-GUANOSINE-5'-MONOPHOSPHATE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1efwa1 (A:1-104)
1b: SCOP_d1efwb1 (B:1-104)
2a: SCOP_d1efwa3 (A:105-294,A:415-580)
2b: SCOP_d1efwb3 (B:105-294,B:415-580)
3a: SCOP_d1efwa2 (A:295-414)
3b: SCOP_d1efwb2 (B:295-414)
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(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Anticodon-binding domain
(21)
Protein domain
:
Aspartyl-tRNA synthetase (AspRS)
(11)
Thermus thermophilus, AspRS-1 [TaxId: 274]
(3)
1a
d1efwa1
A:1-104
1b
d1efwb1
B:1-104
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
(103)
Protein domain
:
Aspartyl-tRNA synthetase (AspRS)
(11)
Thermus thermophilus, AspRS-1 [TaxId: 274]
(3)
2a
d1efwa3
A:105-294,A:415-580
2b
d1efwb3
B:105-294,B:415-580
Fold
:
DCoH-like
(107)
Superfamily
:
GAD domain-like
(9)
Family
:
GAD domain
(8)
Protein domain
:
Prokaryotic AspRS, insert domain
(6)
Thermus thermophilus, AspRS-1 [TaxId: 274]
(3)
3a
d1efwa2
A:295-414
3b
d1efwb2
B:295-414
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1efwA02 (A:137-277,A:416-580)
1b: CATH_1efwB02 (B:137-277,B:416-580)
2a: CATH_1efwA03 (A:278-415)
2b: CATH_1efwB03 (B:278-415)
3a: CATH_1efwA01 (A:1-106)
3b: CATH_1efwB01 (B:1-106)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
BirA Bifunctional Protein; domain 2
(111)
Homologous Superfamily
:
Bira Bifunctional Protein; Domain 2
(111)
Escherichia coli. Organism_taxid: 562.
(7)
1a
1efwA02
A:137-277,A:416-580
1b
1efwB02
B:137-277,B:416-580
Topology
:
Gyrase A; domain 2
(166)
Homologous Superfamily
:
[code=3.30.1360.30, no name defined]
(7)
Escherichia coli. Organism_taxid: 562.
(3)
2a
1efwA03
A:278-415
2b
1efwB03
B:278-415
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Escherichia coli. Organism_taxid: 562.
(7)
3a
1efwA01
A:1-106
3b
1efwB01
B:1-106
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (263 KB)
Header - Asym.Unit
Biol.Unit 1 (129 KB)
Header - Biol.Unit 1
Biol.Unit 2 (129 KB)
Header - Biol.Unit 2
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