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1EBP
Asym. Unit
Info
Asym.Unit (76 KB)
Biol.Unit 1 (72 KB)
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(1)
Title
:
COMPLEX BETWEEN THE EXTRACELLULAR DOMAIN OF ERYTHROPOIETIN (EPO) RECEPTOR [EBP] AND AN AGONIST PEPTIDE [EMP1]
Authors
:
O. Livnah, E. A. Stura, I. A. Wilson
Date
:
07 May 96 (Deposition) - 29 Jul 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Erythropoietin Receptor, Signal Transduction, Protein Minimization, Drug Design, Cytokine Receptor Class 1, Complex (Cytokine Receptor/Peptide)
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Livnah, E. A. Stura, D. L. Johnson, S. A. Middleton, L. S. Mulcahy, N. C. Wrighton, W. J. Dower, L. K. Jolliffe, I. A. Wilson
Functional Mimicry Of A Protein Hormone By A Peptide Agonist: The Epo Receptor Complex At 2. 8 A.
Science V. 273 464 1996
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: FN3 (A:123-220,B:123-220)
2: HEMATOPO_REC_L_F1 (A:138-218,B:138-218)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
EPOR_HUMAN
147-247
2
A:123-220
B:123-220
2
HEMATOPO_REC_L_F1
PS01352
Long hematopoietin receptor, single chain family signature.
EPOR_HUMAN
162-242
2
A:138-218
B:138-218
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Exons
(5, 10)
Info
All Exons
Exon 1.1 (A:10-15 | B:10-15)
Exon 1.2 (A:15-60 | B:15-60)
Exon 1.3 (A:60-119 | B:60-119)
Exon 1.4 (A:119-171 | B:119-171)
Exon 1.5 (A:172-220 | B:172-220)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000222139
1
ENSE00001338639
chr19:
11495019-11494769
251
EPOR_HUMAN
1-39
39
2
A:10-15
B:10-15
6
6
1.2
ENST00000222139
2
ENSE00001246294
chr19:
11493908-11493773
136
EPOR_HUMAN
39-84
46
2
A:15-60
B:15-60
46
46
1.3
ENST00000222139
3
ENSE00001185968
chr19:
11492781-11492606
176
EPOR_HUMAN
84-143
60
2
A:60-119
B:60-119
60
60
1.4
ENST00000222139
4
ENSE00000680536
chr19:
11492525-11492368
158
EPOR_HUMAN
143-195
53
2
A:119-171
B:119-171
53
53
1.5
ENST00000222139
5
ENSE00000680533
chr19:
11491885-11491732
154
EPOR_HUMAN
196-247
52
2
A:172-220
B:172-220
49
49
1.6
ENST00000222139
6
ENSE00000680531
chr19:
11491647-11491560
88
EPOR_HUMAN
247-276
30
0
-
-
1.7
ENST00000222139
7
ENSE00000680529
chr19:
11489454-11489367
88
EPOR_HUMAN
276-305
30
0
-
-
1.8
ENST00000222139
8
ENSE00001131148
chr19:
11489271-11488475
797
EPOR_HUMAN
306-508
203
0
-
-
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SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1ebpa1 (A:10-116)
1b: SCOP_d1ebpa2 (A:117-220)
1c: SCOP_d1ebpb1 (B:10-116)
1d: SCOP_d1ebpb2 (B:117-220)
2a: SCOP_d1ebpc_ (C:)
2b: SCOP_d1ebpd_ (D:)
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Erythropoietin (EPO) receptor
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1ebpa1
A:10-116
1b
d1ebpa2
A:117-220
1c
d1ebpb1
B:10-116
1d
d1ebpb2
B:117-220
Class
:
Designed proteins
(167)
Fold
:
Erythropoietin (EPO) mimetic peptides
(3)
Superfamily
:
Erythropoietin (EPO) mimetic peptides
(3)
Family
:
Erythropoietin (EPO) mimetic peptides
(3)
Protein domain
:
Erythropoietin (EPO) mimetic peptides
(3)
Synthetic
(3)
2a
d1ebpc_
C:
2b
d1ebpd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ebpA02 (A:119-220)
1b: CATH_1ebpB02 (B:119-220)
1c: CATH_1ebpA01 (A:22-118)
1d: CATH_1ebpB01 (B:22-118)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1ebpA02
A:119-220
1b
1ebpB02
B:119-220
1c
1ebpA01
A:22-118
1d
1ebpB01
B:22-118
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (76 KB)
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