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1E12
Biol. Unit 1
Info
Asym.Unit (52 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
HALORHODOPSIN, A LIGHT-DRIVEN CHLORIDE PUMP
Authors
:
M. Kolbe, H. Besir, L. -O. Essen, D. Oesterhelt
Date
:
14 Apr 00 (Deposition) - 02 Jun 00 (Release) - 03 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Ion Pump, Chloride Pump, Membrane Protein, Retinal Protein, Lipids, Palmitate, Haloarchaea, Chloride Transport, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Kolbe, H. Besir, L. -O. Essen, D. Oesterhelt
Structure Of Light-Driven Chloride Pump Halorhodopsin At 1. 8 A Resolution
Science V. 288 1390 2000
(for further references see the
PDB file header
)
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Hetero Components
(3, 36)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: POTASSIUM ION (Ka)
3a: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCa)
3b: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCb)
3c: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCc)
3d: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCd)
3e: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCe)
3f: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCf)
3g: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCg)
3h: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCh)
3i: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCi)
3j: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCj)
4a: PALMITIC ACID (PLMa)
5a: RETINAL (RETa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
K
-1
Ligand/Ion
POTASSIUM ION
3
OLC
30
Ligand/Ion
(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
4
PLM
3
Ligand/Ion
PALMITIC ACID
5
RET
3
Ligand/Ion
RETINAL
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:111 , SER A:115 , LYS A:242
BINDING SITE FOR RESIDUE CL A 501
02
AC2
SOFTWARE
GLY A:83 , VAL A:86
BINDING SITE FOR RESIDUE K A 503
03
AC3
SOFTWARE
TRP A:112 , THR A:116 , MET A:144 , TYR A:165 , SER A:168 , PHE A:172 , TRP A:207 , TYR A:210 , PRO A:211 , ASP A:238 , LYS A:242
BINDING SITE FOR RESIDUE RET A 999
04
AC4
SOFTWARE
SER A:75 , LEU A:110 , THR A:111 , PRO A:117 , PHE A:135 , ALA A:139 , VAL A:146
BINDING SITE FOR RESIDUE PLM A 700
05
AC5
SOFTWARE
TRP A:162 , HOH A:2064
BINDING SITE FOR RESIDUE OLC A 701
06
AC6
SOFTWARE
OLC A:705 , OLC A:719
BINDING SITE FOR RESIDUE OLC A 703
07
AC7
SOFTWARE
OLC A:703
BINDING SITE FOR RESIDUE OLC A 705
08
AC8
SOFTWARE
ALA A:157 , LEU A:159 , PHE A:160 , OLC A:717
BINDING SITE FOR RESIDUE OLC A 709
09
AC9
SOFTWARE
ILE A:212
BINDING SITE FOR RESIDUE OLC A 711
10
BC1
SOFTWARE
GLY A:41 , ILE A:42 , LEU A:45 , OLC A:715
BINDING SITE FOR RESIDUE OLC A 713
11
BC2
SOFTWARE
VAL A:37 , ALA A:38 , LEU A:45 , OLC A:713 , OLC A:717
BINDING SITE FOR RESIDUE OLC A 715
12
BC3
SOFTWARE
ARG A:52 , OLC A:709 , OLC A:715
BINDING SITE FOR RESIDUE OLC A 717
13
BC4
SOFTWARE
OLC A:703
BINDING SITE FOR RESIDUE OLC A 719
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: BACTERIAL_OPSIN_1 (A:108-120)
2: BACTERIAL_OPSIN_RET (A:234-245)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BACTERIAL_OPSIN_1
PS00950
Bacterial rhodopsins signature 1.
BACH_HALS3
108-120
3
A:108-120
BACH_HALSA
108-120
3
A:108-120
2
BACTERIAL_OPSIN_RET
PS00327
Bacterial rhodopsins retinal binding site.
BACH_HALS3
234-245
3
A:234-245
BACH_HALSA
234-245
3
A:234-245
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1e12a_ (A:)
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Family A G protein-coupled receptor-like
(138)
Superfamily
:
Family A G protein-coupled receptor-like
(138)
Family
:
Bacteriorhodopsin-like
(107)
Protein domain
:
Halorhodopsin
(1)
Halobacterium salinarum [TaxId: 2242]
(1)
1a
d1e12a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1e12A00 (A:24-262)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Rhopdopsin 7-helix transmembrane proteins
(128)
Homologous Superfamily
:
Rhopdopsin 7-helix transmembrane proteins
(128)
Halobacterium salinarum. Organism_taxid: 2242. Strain: d2.
(1)
1a
1e12A00
A:24-262
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Pfam Domains
(0, 0)
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all PFAM domains
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
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Asym.Unit (52 KB)
Header - Asym.Unit
Biol.Unit 1 (131 KB)
Header - Biol.Unit 1
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