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1DWK
Biol. Unit 1
Info
Asym.Unit (305 KB)
Biol.Unit 1 (296 KB)
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(1)
Title
:
STRUCTURE OF CYANASE WITH THE DI-ANION OXALATE BOUND AT THE ENZYME ACTIVE SITE
Authors
:
M. A. Walsh, Z. Otwinowski, A. Perrakis, P. M. Anderson, A. Joachimiak
Date
:
07 Dec 99 (Deposition) - 16 May 00 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Lyase, Cyanate Degradation, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Walsh, Z. Otwinowski, A. Perrakis, P. M. Anderson, A. Joachimiak
Structure Of Cyanase Reveals That A Novel Dimeric And Decameric Arrangement Of Subunits Is Required For Formation Of The Enzyme Active Site.
Structure V. 8 505 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 68)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1ag: SELENOMETHIONINE (MSEag)
1ah: SELENOMETHIONINE (MSEah)
1ai: SELENOMETHIONINE (MSEai)
1aj: SELENOMETHIONINE (MSEaj)
1ak: SELENOMETHIONINE (MSEak)
1al: SELENOMETHIONINE (MSEal)
1am: SELENOMETHIONINE (MSEam)
1an: SELENOMETHIONINE (MSEan)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: OXALATE ION (OXLa)
2b: OXALATE ION (OXLb)
2c: OXALATE ION (OXLc)
2d: OXALATE ION (OXLd)
2e: OXALATE ION (OXLe)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
40
Mod. Amino Acid
SELENOMETHIONINE
2
OXL
5
Ligand/Ion
OXALATE ION
3
SO4
23
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:39 , GLU A:40 , HOH A:366 , HOH A:448 , HOH A:463 , HOH A:408 , HOH A:320 , HOH A:335
BINDING SITE FOR RESIDUE SO4 A 1157
02
AC2
SOFTWARE
ALA B:39 , GLU B:40 , HOH B:318 , HOH B:465 , HOH B:371 , HOH B:314
BINDING SITE FOR RESIDUE SO4 B 1157
03
AC3
SOFTWARE
ALA C:39 , GLU C:40 , HOH C:341 , HOH C:410 , HOH C:337 , HOH C:307
BINDING SITE FOR RESIDUE SO4 C 1157
04
AC4
SOFTWARE
ALA D:39 , GLU D:40 , HOH D:411 , HOH D:462 , HOH D:306 , HOH D:311
BINDING SITE FOR RESIDUE SO4 D 1157
05
AC5
SOFTWARE
ALA E:39 , GLU E:40 , HOH E:424 , HOH E:369 , HOH E:335
BINDING SITE FOR RESIDUE SO4 E 1157
06
AC6
SOFTWARE
ALA F:39 , GLU F:40 , HOH F:451 , HOH F:414 , HOH F:302
BINDING SITE FOR RESIDUE SO4 F 1157
07
AC7
SOFTWARE
ALA G:39 , GLU G:40 , HOH G:318 , HOH G:409 , HOH G:322 , HOH G:304
BINDING SITE FOR RESIDUE SO4 G 1157
08
AC8
SOFTWARE
ALA H:39 , GLU H:40 , HOH H:403 , HOH H:323
BINDING SITE FOR RESIDUE SO4 H 1157
09
AC9
SOFTWARE
ALA I:39 , GLU I:40 , HOH I:418 , HOH I:305
BINDING SITE FOR RESIDUE SO4 I 1157
10
BC1
SOFTWARE
ALA J:39 , GLU J:40 , HOH J:407 , HOH J:307
BINDING SITE FOR RESIDUE SO4 J 1157
11
BC2
SOFTWARE
ARG A:87 , SO4 A:202 , ARG B:87 , ARG D:87 , SO4 D:203 , ARG J:87 , HOH B:312 , HOH B:397
BINDING SITE FOR RESIDUE SO4 A 1158
12
BC3
SOFTWARE
ARG A:87 , SO4 B:201 , ARG C:87 , SO4 G:201 , ARG I:87 , ARG J:87 , HOH A:309 , HOH A:310
BINDING SITE FOR RESIDUE SO4 A 1159
13
BC4
SOFTWARE
SO4 A:202 , ARG C:87 , SO4 F:201 , ARG G:87 , ARG H:87 , ARG I:87 , HOH G:353
BINDING SITE FOR RESIDUE SO4 C 1158
14
BC5
SOFTWARE
SO4 G:201 , ARG E:87 , SO4 D:203 , ARG F:87 , ARG G:87 , ARG H:87 , HOH F:372
BINDING SITE FOR RESIDUE SO4 E 1158
15
BC6
SOFTWARE
SO4 B:201 , ARG B:87 , ARG D:87 , ARG E:87 , SO4 F:201 , ARG F:87 , HOH D:382
BINDING SITE FOR RESIDUE SO4 E 1159
16
BC7
SOFTWARE
ASP A:34 , GLY A:35 , THR A:36 , GLY A:37 , LYS E:131 , HOH A:306 , HOH A:301 , HOH A:312 , HOH A:378 , HOH A:388
BINDING SITE FOR RESIDUE SO4 A 1160
17
BC8
SOFTWARE
ASP D:34 , GLY D:35 , THR D:36 , GLY D:37 , HOH D:303
BINDING SITE FOR RESIDUE SO4 D 1158
18
BC9
SOFTWARE
ASP E:34 , GLY E:35 , GLY E:37 , HOH E:327 , HOH E:307
BINDING SITE FOR RESIDUE SO4 E 1160
19
CC1
SOFTWARE
ALA F:33 , ASP F:34 , GLY F:35 , THR F:36 , GLY F:37 , HOH F:316 , HOH F:301
BINDING SITE FOR RESIDUE SO4 F 1158
20
CC2
SOFTWARE
LYS D:131 , HOH D:406 , HOH D:347 , ALA G:33 , ASP G:34 , GLY G:35 , THR G:36 , GLY G:37 , HOH G:309
BINDING SITE FOR RESIDUE SO4 G 1158
21
CC3
SOFTWARE
ALA H:33 , ASP H:34 , GLY H:35 , GLY H:37 , HOH H:353 , HOH H:304
BINDING SITE FOR RESIDUE SO4 H 1158
22
CC4
SOFTWARE
ALA I:33 , ASP I:34 , GLY I:35 , THR I:36 , GLY I:37 , HOH I:351 , HOH I:357
BINDING SITE FOR RESIDUE SO4 I 1158
23
CC5
SOFTWARE
ALA J:33 , ASP J:34 , GLY J:35 , THR J:36 , GLY J:37 , HOH J:328 , HOH J:405
BINDING SITE FOR RESIDUE SO4 J 1158
24
CC6
SOFTWARE
ILE A:120 , SER A:122 , ALA A:123 , LEU A:151 , ARG D:96 , ARG I:96 , ILE J:120 , SER J:122 , ALA J:123 , LEU J:151 , HOH J:363
BINDING SITE FOR RESIDUE OXL A 1161
25
CC7
SOFTWARE
ARG A:96 , ILE B:120 , SER B:122 , ALA B:123 , LEU B:151 , ILE D:120 , SER D:122 , ALA D:123 , LEU D:151 , ARG F:96
BINDING SITE FOR RESIDUE OXL D 1159
26
CC8
SOFTWARE
ILE C:120 , SER C:122 , ALA C:123 , LEU C:151 , ARG H:96 , ILE I:120 , SER I:122 , ALA I:123 , LEU I:151 , ARG J:96
BINDING SITE FOR RESIDUE OXL I 1159
27
CC9
SOFTWARE
ARG B:96 , ILE E:120 , SER E:122 , ALA E:123 , LEU E:151 , ILE F:120 , SER F:122 , ALA F:123 , LEU F:151 , ARG G:96
BINDING SITE FOR RESIDUE OXL E 1161
28
DC1
SOFTWARE
ARG C:96 , ARG E:96 , ILE G:120 , SER G:122 , ALA G:123 , LEU G:151 , ILE H:120 , SER H:122 , ALA H:123 , LEU H:151
BINDING SITE FOR RESIDUE OXL G 1159
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 20)
Info
All SCOP Domains
1a: SCOP_d1dwka1 (A:1-86)
1b: SCOP_d1dwkb1 (B:1-86)
1c: SCOP_d1dwkc1 (C:1-86)
1d: SCOP_d1dwkd1 (D:1-86)
1e: SCOP_d1dwke1 (E:1-86)
1f: SCOP_d1dwkf1 (F:1-86)
1g: SCOP_d1dwkg1 (G:1-86)
1h: SCOP_d1dwkh1 (H:1-86)
1i: SCOP_d1dwki1 (I:1-86)
1j: SCOP_d1dwkj1 (J:1-86)
2a: SCOP_d1dwka2 (A:87-156)
2b: SCOP_d1dwkb2 (B:87-156)
2c: SCOP_d1dwkc2 (C:87-156)
2d: SCOP_d1dwkd2 (D:87-156)
2e: SCOP_d1dwke2 (E:87-156)
2f: SCOP_d1dwkf2 (F:87-156)
2g: SCOP_d1dwkg2 (G:87-156)
2h: SCOP_d1dwkh2 (H:87-156)
2i: SCOP_d1dwki2 (I:87-156)
2j: SCOP_d1dwkj2 (J:87-156)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
lambda repressor-like DNA-binding domains
(180)
Superfamily
:
lambda repressor-like DNA-binding domains
(180)
Family
:
Cyanase N-terminal domain
(8)
Protein domain
:
Cyanase N-terminal domain
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1dwka1
A:1-86
1b
d1dwkb1
B:1-86
1c
d1dwkc1
C:1-86
1d
d1dwkd1
D:1-86
1e
d1dwke1
E:1-86
1f
d1dwkf1
F:1-86
1g
d1dwkg1
G:1-86
1h
d1dwkh1
H:1-86
1i
d1dwki1
I:1-86
1j
d1dwkj1
J:1-86
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cyanase C-terminal domain
(8)
Superfamily
:
Cyanase C-terminal domain
(8)
Family
:
Cyanase C-terminal domain
(8)
Protein domain
:
Cyanase C-terminal domain
(2)
Escherichia coli [TaxId: 562]
(2)
2a
d1dwka2
A:87-156
2b
d1dwkb2
B:87-156
2c
d1dwkc2
C:87-156
2d
d1dwkd2
D:87-156
2e
d1dwke2
E:87-156
2f
d1dwkf2
F:87-156
2g
d1dwkg2
G:87-156
2h
d1dwkh2
H:87-156
2i
d1dwki2
I:87-156
2j
d1dwkj2
J:87-156
[
close SCOP info
]
CATH Domains
(2, 20)
Info
all CATH domains
1a: CATH_1dwkA02 (A:89-153)
1b: CATH_1dwkB02 (B:89-153)
1c: CATH_1dwkC02 (C:89-153)
1d: CATH_1dwkD02 (D:89-153)
1e: CATH_1dwkE02 (E:89-153)
1f: CATH_1dwkF02 (F:89-153)
1g: CATH_1dwkG02 (G:89-153)
1h: CATH_1dwkH02 (H:89-153)
1i: CATH_1dwkI02 (I:89-153)
1j: CATH_1dwkJ02 (J:89-153)
2a: CATH_1dwkA01 (A:2-88)
2b: CATH_1dwkB01 (B:2-88)
2c: CATH_1dwkC01 (C:2-88)
2d: CATH_1dwkD01 (D:2-88)
2e: CATH_1dwkE01 (E:2-88)
2f: CATH_1dwkF01 (F:2-88)
2g: CATH_1dwkG01 (G:2-88)
2h: CATH_1dwkH01 (H:2-88)
2i: CATH_1dwkI01 (I:2-88)
2j: CATH_1dwkJ01 (J:2-88)
View:
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Topologies
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cyanate Lyase; Chain: A, domain 2
(8)
Homologous Superfamily
:
[code=3.30.1160.10, no name defined]
(8)
Escherichia coli. Organism_taxid: 562.
(8)
1a
1dwkA02
A:89-153
1b
1dwkB02
B:89-153
1c
1dwkC02
C:89-153
1d
1dwkD02
D:89-153
1e
1dwkE02
E:89-153
1f
1dwkF02
F:89-153
1g
1dwkG02
G:89-153
1h
1dwkH02
H:89-153
1i
1dwkI02
I:89-153
1j
1dwkJ02
J:89-153
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
434 Repressor (Amino-terminal Domain)
(116)
Homologous Superfamily
:
lambda repressor-like DNA-binding domains
(100)
Escherichia coli. Organism_taxid: 562.
(10)
2a
1dwkA01
A:2-88
2b
1dwkB01
B:2-88
2c
1dwkC01
C:2-88
2d
1dwkD01
D:2-88
2e
1dwkE01
E:2-88
2f
1dwkF01
F:2-88
2g
1dwkG01
G:2-88
2h
1dwkH01
H:2-88
2i
1dwkI01
I:2-88
2j
1dwkJ01
J:2-88
[
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Pfam Domains
(0, 0)
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