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1DT7
Asym. Unit
Info
Asym.Unit (2.4 MB)
Biol.Unit 1 (64 KB)
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Models
(40 )
Title
:
SOLUTION STRUCTURE OF THE C-TERMINAL NEGATIVE REGULATORY DOMAIN OF P53 IN A COMPLEX WITH CA2+-BOUND S100B(BB)
Authors
:
R. R. Rustandi, D. M. Baldisseri, D. J. Weber
Date
:
11 Jan 00 (Deposition) - 26 Jul 00 (Release) - 27 Apr 16 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B,X,Y (40 x)
Biol. Unit 1: A,B,X,Y (1x)
Keywords
:
S100B, P53, C-Terminal Domain Of P53, Calcium-Binding, Ef-Hand, S100 Protein, Four Helix Bundle, Helix Loop Helix, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. R. Rustandi, D. M. Baldisseri, D. J. Weber
Structure Of The Negative Regulatory Domain Of P53 Bound To S100B(Betabeta).
Nat. Struct. Biol. V. 7 570 2000
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:18 , ASP A:23 , LYS A:26 , LEU A:27 , GLU A:31
BINDING SITE FOR RESIDUE CA A 114
2
AC2
SOFTWARE
ASP A:61 , GLU A:62 , ASP A:63 , GLY A:64 , ASP A:65 , GLU A:67 , GLU A:72
BINDING SITE FOR RESIDUE CA A 115
3
AC3
SOFTWARE
SER B:18 , ASP B:23 , LYS B:26 , GLU B:31
BINDING SITE FOR RESIDUE CA B 116
4
AC4
SOFTWARE
ASP B:61 , GLU B:62 , ASP B:63 , GLY B:64 , ASP B:65 , GLU B:67 , GLU B:72
BINDING SITE FOR RESIDUE CA B 117
[
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SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_045569 (K95Q, chain X/Y, )
2: VAR_045570 (S101A, chain X/Y, )
3: VAR_045571 (S101T, chain X/Y, )
4: VAR_045572 (R104H, chain X/Y, )
5: VAR_045573 (F110L, chain X/Y, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_045569
K
370
Q
P53_HUMAN
Unclassified
---
X/Y
K
95
Q
2
UniProt
VAR_045570
S
376
A
P53_HUMAN
Unclassified
---
X/Y
S
101
A
3
UniProt
VAR_045571
S
376
T
P53_HUMAN
Unclassified
---
X/Y
S
101
T
4
UniProt
VAR_045572
R
379
H
P53_HUMAN
Unclassified
---
X/Y
R
104
H
5
UniProt
VAR_045573
F
385
L
P53_HUMAN
Unclassified
---
X/Y
F
110
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:48-83,B:48-83)
2: S100_CABP (A:56-77,B:56-77)
3: EF_HAND_1 (A:61-73,B:61-73)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
S100B_RAT
49-84
2
A:48-83
B:48-83
2
S100_CABP
PS00303
S-100/ICaBP type calcium binding protein signature.
S100B_RAT
57-78
2
A:56-77
B:56-77
3
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
S100B_RAT
62-74
2
A:61-73
B:61-73
[
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Exons
(4, 8)
Info
All Exons
Exon 1.2 (A:0-45 | B:0-45)
Exon 1.3 (A:46-91 | B:46-91)
Exon 2.11 (X:92-92 | Y:92-92)
Exon 2.12d (X:92-113 | Y:92-113)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/-
4: Boundary 2.9/2.11
5: Boundary 2.11/2.12d
6: Boundary 2.12d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000001743
1
ENSRNOE00000012113
chr20:
12824508-12824397
112
S100B_RAT
-
0
0
-
-
1.2
ENSRNOT00000001743
2
ENSRNOE00000012114
chr20:
12796288-12796143
146
S100B_RAT
1-46
46
2
A:0-45
B:0-45
46
46
1.3
ENSRNOT00000001743
3
ENSRNOE00000012115
chr20:
12792665-12791440
1226
S100B_RAT
47-92
46
2
A:46-91
B:46-91
46
46
2.1a
ENST00000269305
1a
ENSE00001146308
chr17:
7590856-7590695
162
P53_HUMAN
-
0
0
-
-
2.3a
ENST00000269305
3a
ENSE00002194362
chr17:
7579940-7579839
102
P53_HUMAN
1-25
25
0
-
-
2.3d
ENST00000269305
3d
ENSE00001710434
chr17:
7579721-7579700
22
P53_HUMAN
25-32
8
0
-
-
2.4b
ENST00000269305
4b
ENSE00001718735
chr17:
7579590-7579312
279
P53_HUMAN
33-125
93
0
-
-
2.5d
ENST00000269305
5d
ENSE00001255919
chr17:
7578554-7578371
184
P53_HUMAN
126-187
62
0
-
-
2.6a
ENST00000269305
6a
ENSE00001255912
chr17:
7578289-7578177
113
P53_HUMAN
187-224
38
0
-
-
2.7b
ENST00000269305
7b
ENSE00001665758
chr17:
7577608-7577499
110
P53_HUMAN
225-261
37
0
-
-
2.8
ENST00000269305
8
ENSE00001789298
chr17:
7577155-7577019
137
P53_HUMAN
261-307
47
0
-
-
2.9
ENST00000269305
9
ENSE00002149110
chr17:
7576926-7576853
74
P53_HUMAN
307-331
25
0
-
-
2.11
ENST00000269305
11
ENSE00001728015
chr17:
7574033-7573927
107
P53_HUMAN
332-367
36
2
X:92-92
Y:92-92
1
1
2.12d
ENST00000269305
12d
ENSE00001757276
chr17:
7573008-7571720
1289
P53_HUMAN
367-393
27
2
X:92-113
Y:92-113
22
22
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1dt7a_ (A:)
1b: SCOP_d1dt7b_ (B:)
2a: SCOP_d1dt7x_ (X:)
2b: SCOP_d1dt7y_ (Y:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
S100 proteins
(101)
Protein domain
:
Calcyclin (S100)
(69)
Norway rat (Rattus norvegicus), s100b [TaxId: 10116]
(7)
1a
d1dt7a_
A:
1b
d1dt7b_
B:
Class
:
Peptides
(792)
Fold
:
Tumor suppressor p53 fragments
(3)
Superfamily
:
Tumor suppressor p53 fragments
(3)
Family
:
Tumor suppressor p53 fragments
(3)
Protein domain
:
C-terminal negative regulatory domain
(1)
Synthetic
(1)
2a
d1dt7x_
X:
2b
d1dt7y_
Y:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1dt7A00 (A:0-91)
1b: CATH_1dt7B00 (B:0-91)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Norway rat (Rattus norvegicus)
(37)
1a
1dt7A00
A:0-91
1b
1dt7B00
B:0-91
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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