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1DP9
Asym. Unit
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Asym.Unit (27 KB)
Biol.Unit 1 (22 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IMIDAZOLE-BOUND FIXL HEME DOMAIN
Authors
:
W. Gong, B. Hao, M. K. Chan
Date
:
24 Dec 99 (Deposition) - 24 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Heme, Fixl Heme Domain Liganded Structure, Pas Domain Family, Two Component System, Histidine Kinase, Oxygen Storage/Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Gong, B. Hao, M. K. Chan
New Mechanistic Insights From Structural Studies Of The Oxygen-Sensing Domain Of Bradyrhizobium Japonicum Fixl.
Biochemistry V. 39 3955 2000
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2a: IMIDAZOLE (IMDa)
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Label:
No.
Name
Count
Type
Full Name
1
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
IMD
1
Ligand/Ion
IMIDAZOLE
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Sites
(2, 2)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:11 , ILE A:215 , LEU A:236 , ILE A:238 , HEM A:719
BINDING SITE FOR RESIDUE IMD A 500
2
AC2
SOFTWARE
HOH A:14 , HOH A:51 , ILE A:159 , VAL A:188 , LEU A:191 , MET A:192 , ASP A:196 , HIS A:200 , TYR A:203 , ARG A:206 , TYR A:207 , HIS A:214 , ILE A:215 , VAL A:222 , THR A:223 , MET A:234 , LEU A:236 , ILE A:238 , PHE A:249 , IMD A:500
BINDING SITE FOR RESIDUE HEM A 719
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
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1: PAC (-|A:209-268)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAC
PS50113
PAC domain profile.
FIXL_BRADU
88-140
209-268
1
-
A:209-268
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d1dp9a_ (A:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Profilin-like
(304)
Superfamily
:
PYP-like sensor domain (PAS domain)
(163)
Family
:
Heme-binding PAS domain
(26)
Protein domain
:
Histidine kinase FixL heme domain
(20)
Bradyrhizobium japonicum [TaxId: 375]
(18)
1a
d1dp9a_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1dp9A00 (A:154-269)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta-Lactamase
(202)
Homologous Superfamily
:
[code=3.30.450.20, no name defined]
(117)
Bradyrhizobium japonicum. Organism_taxid: 375.
(7)
1a
1dp9A00
A:154-269
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Pfam Domains
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