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1DM5
Biol. Unit 1
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Asym.Unit (321 KB)
Biol.Unit 1 (315 KB)
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(1)
Title
:
ANNEXIN XII E105K HOMOHEXAMER CRYSTAL STRUCTURE
Authors
:
J. P. Cartailler, H. T. Haigler, H. Luecke
Date
:
13 Dec 99 (Deposition) - 20 Mar 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Homohexamer, Novel Ph-Dependent Hexamerization Switch E76, Low Calcium Form, Mixed Typeii/Typeiii Calcium Binding Site, E105K Epsilon Amino Group Replaces Intermolecular Calcium, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. P. Cartailler, H. T. Haigler, H. Luecke
Annexin Xii E105K Crystal Structure: Identification Of A Ph-Dependent Switch For Mutant Hexamerization.
Biochemistry V. 39 2475 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:98 , GLY A:102 , THR A:103 , GLU A:142 , LYS E:68
BINDING SITE FOR RESIDUE CA A 1121
02
AC2
SOFTWARE
MET B:98 , GLY B:100 , GLY B:102 , GLU B:142
BINDING SITE FOR RESIDUE CA B 1122
03
AC3
SOFTWARE
MET C:98 , LYS C:99 , GLY C:100 , GLY C:102 , HOH C:1240 , HOH C:1255
BINDING SITE FOR RESIDUE CA C 1123
04
AC4
SOFTWARE
MET D:98 , LYS D:99 , GLY D:100 , GLY D:102
BINDING SITE FOR RESIDUE CA D 1124
05
AC5
SOFTWARE
MET E:98 , LYS E:99 , GLY E:100 , HOH E:1213
BINDING SITE FOR RESIDUE CA E 1125
06
AC6
SOFTWARE
MET F:98 , GLY F:100 , LEU F:101 , GLY F:102 , HOH F:1260
BINDING SITE FOR RESIDUE CA F 1126
07
AC7
SOFTWARE
GLY A:181 , GLN A:184 , ILE A:185 , GLY A:186 , THR A:187 , GLU A:226 , HOH A:1255
BINDING SITE FOR RESIDUE CA A 1131
08
AC8
SOFTWARE
GLY B:181 , GLN B:184 , ILE B:185 , GLY B:186 , GLU B:226
BINDING SITE FOR RESIDUE CA B 1132
09
AC9
SOFTWARE
GLY C:181 , GLN C:184 , ILE C:185 , GLY C:186 , GLU C:226
BINDING SITE FOR RESIDUE CA C 1133
10
BC1
SOFTWARE
GLY D:181 , GLN D:184 , ILE D:185 , GLY D:186 , GLU D:226 , HOH D:1258
BINDING SITE FOR RESIDUE CA D 1134
11
BC2
SOFTWARE
GLY E:181 , GLN E:184 , ILE E:185 , GLY E:186 , GLU E:226
BINDING SITE FOR RESIDUE CA E 1135
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 18)
Info
All PROSITE Patterns/Profiles
1: ANNEXIN (A:30-82,B:30-82,C:30-82,D:30-82,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANNEXIN
PS00223
Annexins repeated domain signature.
ANX12_HYDVU
30-82
186-238
261-313
18
A:30-82
B:30-82
C:30-82
D:30-82
E:30-82
F:30-82
A:186-238
B:186-238
C:186-238
D:186-238
E:186-238
F:186-238
A:261-313
B:261-313
C:261-313
D:261-313
E:261-313
F:261-313
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1dm5a_ (A:)
1b: SCOP_d1dm5b_ (B:)
1c: SCOP_d1dm5c_ (C:)
1d: SCOP_d1dm5d_ (D:)
1e: SCOP_d1dm5e_ (E:)
1f: SCOP_d1dm5f_ (F:)
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(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Annexin
(61)
Superfamily
:
Annexin
(61)
Family
:
Annexin
(56)
Protein domain
:
Annexin XII
(2)
Hydra vulgaris [TaxId: 6087]
(1)
1a
d1dm5a_
A:
1b
d1dm5b_
B:
1c
d1dm5c_
C:
1d
d1dm5d_
D:
1e
d1dm5e_
E:
1f
d1dm5f_
F:
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CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_1dm5A01 (A:12-84)
1b: CATH_1dm5B01 (B:12-84)
1c: CATH_1dm5E04 (E:245-316)
1d: CATH_1dm5F04 (F:245-316)
1e: CATH_1dm5A02 (A:85-158)
1f: CATH_1dm5B02 (B:85-158)
1g: CATH_1dm5C02 (C:85-158)
1h: CATH_1dm5D02 (D:85-158)
1i: CATH_1dm5E02 (E:85-158)
1j: CATH_1dm5F02 (F:85-158)
1k: CATH_1dm5A03 (A:159-244)
1l: CATH_1dm5B03 (B:159-244)
1m: CATH_1dm5C01 (C:12-84)
1n: CATH_1dm5C03 (C:159-244)
1o: CATH_1dm5D03 (D:159-244)
1p: CATH_1dm5E03 (E:159-244)
1q: CATH_1dm5F03 (F:159-244)
1r: CATH_1dm5D01 (D:12-84)
1s: CATH_1dm5E01 (E:12-84)
1t: CATH_1dm5F01 (F:12-84)
1u: CATH_1dm5A04 (A:245-316)
1v: CATH_1dm5B04 (B:245-316)
1w: CATH_1dm5C04 (C:245-316)
1x: CATH_1dm5D04 (D:245-316)
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Homologous Superfamilies
(
)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Annexin V; domain 1
(80)
Homologous Superfamily
:
[code=1.10.220.10, no name defined]
(58)
Hydra vulgaris. Organism_taxid: 6087.
(1)
1a
1dm5A01
A:12-84
1b
1dm5B01
B:12-84
1c
1dm5E04
E:245-316
1d
1dm5F04
F:245-316
1e
1dm5A02
A:85-158
1f
1dm5B02
B:85-158
1g
1dm5C02
C:85-158
1h
1dm5D02
D:85-158
1i
1dm5E02
E:85-158
1j
1dm5F02
F:85-158
1k
1dm5A03
A:159-244
1l
1dm5B03
B:159-244
1m
1dm5C01
C:12-84
1n
1dm5C03
C:159-244
1o
1dm5D03
D:159-244
1p
1dm5E03
E:159-244
1q
1dm5F03
F:159-244
1r
1dm5D01
D:12-84
1s
1dm5E01
E:12-84
1t
1dm5F01
F:12-84
1u
1dm5A04
A:245-316
1v
1dm5B04
B:245-316
1w
1dm5C04
C:245-316
1x
1dm5D04
D:245-316
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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