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1DLO
Biol. Unit 1
Info
Asym.Unit (163 KB)
Biol.Unit 1 (157 KB)
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(1)
Title
:
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
Authors
:
Y. Hsiou, J. Ding, K. Das, S. Hughes, E. Arnold
Date
:
17 Apr 96 (Deposition) - 01 Aug 96 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nucleotidyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Hsiou, J. Ding, K. Das, A. D. Clark Jr. , S. H. Hughes, E. Arnold
Structure Of Unliganded Hiv-1 Reverse Transcriptase At 2. 7 A Resolution: Implications Of Conformational Changes For Polymerization And Inhibition Mechanisms.
Structure V. 4 853 1996
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(5, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_POL_HV1B1_003 (K172R, chain A/B, )
2: VAR_POL_HV1B1_004 (K451R, chain A, )
3: VAR_POL_HV1B1_005 (V458L, chain A, )
4: VAR_POL_HV1B1_006 (K512Q, chain A, )
5: VAR_POL_HV1B1_007 (E529Q, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POL_HV1B1_003
*
K
771
R
POL_HV1B1
---
---
A/B
K
172
R
2
UniProt
VAR_POL_HV1B1_004
*
K
1050
R
POL_HV1B1
---
---
A
K
451
R
3
UniProt
VAR_POL_HV1B1_005
*
V
1057
L
POL_HV1B1
---
---
A
V
458
L
4
UniProt
VAR_POL_HV1B1_006
*
K
1111
Q
POL_HV1B1
---
---
A
K
512
Q
5
UniProt
VAR_POL_HV1B1_007
*
E
1128
Q
POL_HV1B1
---
---
A
E
529
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: RT_POL (A:44-234,B:44-234)
2: RNASE_H (A:434-556)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RT_POL
PS50878
Reverse transcriptase (RT) catalytic domain profile.
POL_HV1B1
643-833
2
A:44-234
B:44-234
2
RNASE_H
PS50879
RNase H domain profile.
POL_HV1B1
1033-1156
1
A:434-556
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1dloa1 (A:430-556)
2a: SCOP_d1dloa2 (A:1-429)
2b: SCOP_d1dlob_ (B:)
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Protein Domains
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Organisms
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)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Ribonuclease H
(190)
Protein domain
:
HIV RNase H (Domain of reverse transcriptase)
(110)
Human immunodeficiency virus type 1 [TaxId: 11676]
(101)
1a
d1dloa1
A:430-556
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Reverse transcriptase
(217)
Protein domain
:
HIV-1 reverse transcriptase
(161)
Human immunodeficiency virus type 1 [TaxId: 11676]
(138)
2a
d1dloa2
A:1-429
2b
d1dlob_
B:
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_1dloA02 (A:91-115,A:157-225)
1b: CATH_1dloB03 (B:239-316)
1c: CATH_1dloA04 (A:320-426)
1d: CATH_1dloB04 (B:317-426)
1e: CATH_1dloB02 (B:93-115,B:157-238)
1f: CATH_1dloA03 (A:226-319)
2a: CATH_1dloA05 (A:427-556)
3a: CATH_1dloB01 (B:1-92,B:116-156)
3b: CATH_1dloA01 (A:1-90,A:116-156)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
Human immunodeficiency virus 1. Organism_taxid: 11676. Strain: bh10 isolate.
(4)
1a
1dloA02
A:91-115,A:157-225
1b
1dloB03
B:239-316
1c
1dloA04
A:320-426
1d
1dloB04
B:317-426
1e
1dloB02
B:93-115,B:157-238
1f
1dloA03
A:226-319
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Human immunodeficiency virus 1. Organism_taxid: 11676. Strain: bh10 isolate.
(4)
2a
1dloA05
A:427-556
Architecture
:
Roll
(3276)
Topology
:
HIV Type 1 Reverse Transcriptase; Chain A, domain 1
(164)
Homologous Superfamily
:
HIV Type 1 Reverse Transcriptase, subunit A, domain 1
(164)
Human immunodeficiency virus 1. Organism_taxid: 11676. Strain: bh10 isolate.
(4)
3a
1dloB01
B:1-92,B:116-156
3b
1dloA01
A:1-90,A:116-156
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (163 KB)
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