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1DKG
Asym. Unit
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Asym.Unit (111 KB)
Biol.Unit 1 (105 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE NUCLEOTIDE EXCHANGE FACTOR GRPE BOUND TO THE ATPASE DOMAIN OF THE MOLECULAR CHAPERONE DNAK
Authors
:
C. J. Harrison, J. Kuriyan
Date
:
13 Feb 97 (Deposition) - 20 Aug 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,D
Biol. Unit 1: A,B,D (1x)
Keywords
:
Hsp70, Grpe, Molecular Chaperone, Nucleotide Exchange Factor, Coiled-Coil, Complex (Hsp24/Hsp70)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Harrison, M. Hayer-Hartl, M. Di Liberto, F. Hartl, J. Kuriyan
Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak.
Science V. 276 431 1997
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(4, 5)
Info
All PROSITE Patterns/Profiles
1: HSP70_1 (D:7-14,D:7-14,D:7-14)
2: GRPE (A:149-192,B:149-192)
3: HSP70_2 (D:192-205,D:192-205,D:192-205)
4: HSP70_3 (D:337-351,D:337-351,D:337-351)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HSP70_1
PS00297
Heat shock hsp70 proteins family signature 1.
DNAK_ECO57
7-14
1
D:7-14
DNAK_ECOL6
7-14
1
D:7-14
DNAK_ECOLI
7-14
1
D:7-14
2
GRPE
PS01071
grpE protein signature.
GRPE_ECOLI
149-192
2
A:149-192
B:149-192
3
HSP70_2
PS00329
Heat shock hsp70 proteins family signature 2.
DNAK_ECO57
192-205
1
D:192-205
DNAK_ECOL6
192-205
1
D:192-205
DNAK_ECOLI
192-205
1
D:192-205
4
HSP70_3
PS01036
Heat shock hsp70 proteins family signature 3.
DNAK_ECO57
337-351
1
D:337-351
DNAK_ECOL6
337-351
1
D:337-351
DNAK_ECOLI
337-351
1
D:337-351
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1dkga1 (A:139-197)
1b: SCOP_d1dkgb1 (B:139-195)
2a: SCOP_d1dkgd1 (D:3-185)
2b: SCOP_d1dkgd2 (D:186-383)
3a: SCOP_d1dkga2 (A:34-138)
3b: SCOP_d1dkgb2 (B:38-138)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Head domain of nucleotide exchange factor GrpE
(1)
Superfamily
:
Head domain of nucleotide exchange factor GrpE
(1)
Family
:
Head domain of nucleotide exchange factor GrpE
(1)
Protein domain
:
Head domain of nucleotide exchange factor GrpE
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1dkga1
A:139-197
1b
d1dkgb1
B:139-195
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Heat shock protein 70kDa, ATPase fragment
(40)
Escherichia coli, gene dnaK [TaxId: 562]
(1)
2a
d1dkgd1
D:3-185
2b
d1dkgd2
D:186-383
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Coiled-coil domain of nucleotide exchange factor GrpE
(1)
Family
:
Coiled-coil domain of nucleotide exchange factor GrpE
(1)
Protein domain
:
Coiled-coil domain of nucleotide exchange factor GrpE
(1)
Escherichia coli [TaxId: 562]
(1)
3a
d1dkga2
A:34-138
3b
d1dkgb2
B:38-138
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CATH Domains
(5, 8)
Info
all CATH domains
1a: CATH_1dkgD02 (D:67-118)
2a: CATH_1dkgD01 (D:3-66,D:119-183,D:363-381)
2b: CATH_1dkgD03 (D:185-227,D:316-362)
3a: CATH_1dkgD04 (D:228-315)
4a: CATH_1dkgA01 (A:34-137)
4b: CATH_1dkgB01 (B:38-137)
5a: CATH_1dkgA02 (A:138-197)
5b: CATH_1dkgB02 (B:138-194)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Defensin A-like
(149)
Homologous Superfamily
:
[code=3.30.30.30, no name defined]
(60)
Escherichia coli. Organism_taxid: 562. Cell_line: bl21 (de3).
(1)
1a
1dkgD02
D:67-118
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Escherichia coli. Organism_taxid: 562. Cell_line: bl21 (de3).
(1)
2a
1dkgD01
D:3-66,D:119-183,D:363-381
2b
1dkgD03
D:185-227,D:316-362
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Escherichia coli. Organism_taxid: 562. Cell_line: bl21 (de3).
(1)
3a
1dkgD04
D:228-315
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.20, no name defined]
(1)
Escherichia coli. Organism_taxid: 562. Cell_line: bl21 (de3).
(1)
4a
1dkgA01
A:34-137
4b
1dkgB01
B:38-137
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Nucleotide Exchange Factor Grpe; Chain A, domain 2
(1)
Homologous Superfamily
:
Nucleotide Exchange Factor Grpe, Chain A, domain 2
(1)
Escherichia coli. Organism_taxid: 562. Cell_line: bl21 (de3).
(1)
5a
1dkgA02
A:138-197
5b
1dkgB02
B:138-194
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Pfam Domains
(0, 0)
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Asym.Unit (111 KB)
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