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1DEV
Asym. Unit
Info
Asym.Unit (79 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (38 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SMAD2 MH2 DOMAIN BOUND TO THE SMAD-BINDING DOMAIN OF SARA
Authors
:
Y. Shi, G. Wu
Date
:
15 Nov 99 (Deposition) - 21 Jan 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Beta Sheet, Three-Helix Bundle, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Wu, Y. G. Chen, B. Ozdamar, C. A. Gyuricza, P. A. Chong, J. L. Wrana, J. Massague, Y. Shi
Structural Basis Of Smad2 Recognition By The Smad Anchor For Receptor Activation.
Science V. 287 92 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036473 (D300V, chain A/C, )
2: VAR_011377 (L440R, chain A/C, )
3: VAR_011378 (P445H, chain A/C, )
4: VAR_011379 (D450E, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036473
D
300
V
SMAD2_HUMAN
Unclassified
---
A/C
D
300
V
2
UniProt
VAR_011377
L
440
R
SMAD2_HUMAN
Unclassified
---
A/C
L
440
R
3
UniProt
VAR_011378
P
445
H
SMAD2_HUMAN
Unclassified
---
A/C
P
445
H
4
UniProt
VAR_011379
D
450
E
SMAD2_HUMAN
Unclassified
---
A/C
D
450
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MH2 (A:274-456,C:274-456)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MH2
PS51076
MAD homology domain 2 (MH2) profile.
SMAD2_HUMAN
274-467
2
A:274-456
C:274-456
[
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]
Exons
(6, 11)
Info
All Exons
Exon 1.8 (- | C:261-262)
Exon 1.9 (A:263-333 | C:262-333)
Exon 1.10 (A:333-379 | C:333-379)
Exon 1.11 (A:379-427 | C:379-423)
Exon 1.12b (A:427-456 | C:428-456)
Exon 2.6 (B:669-709 | D:669-707)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.7/1.8
2: Boundary 1.8/1.9
3: Boundary 1.9/1.10
4: Boundary 1.10/1.11
5: Boundary 1.11/1.12b
6: Boundary 1.12b/-
7: Boundary 2.5a/2.6
8: Boundary 2.6/2.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000262160
2
ENSE00001533831
chr18:
45456930-45456732
199
SMAD2_HUMAN
-
0
0
-
-
1.3
ENST00000262160
3
ENSE00001191187
chr18:
45423180-45422892
289
SMAD2_HUMAN
1-79
79
0
-
-
1.4
ENST00000262160
4
ENSE00001248514
chr18:
45396935-45396846
90
SMAD2_HUMAN
79-109
31
0
-
-
1.5
ENST00000262160
5
ENSE00001248509
chr18:
45395807-45395614
194
SMAD2_HUMAN
109-174
66
0
-
-
1.6
ENST00000262160
6
ENSE00001248503
chr18:
45394828-45394694
135
SMAD2_HUMAN
174-219
46
0
-
-
1.7
ENST00000262160
7
ENSE00001728507
chr18:
45391504-45391430
75
SMAD2_HUMAN
219-244
26
0
-
-
1.8
ENST00000262160
8
ENSE00001248493
chr18:
45377698-45377645
54
SMAD2_HUMAN
244-262
19
1
-
C:261-262
-
2
1.9
ENST00000262160
9
ENSE00001248484
chr18:
45375058-45374846
213
SMAD2_HUMAN
262-333
72
2
A:263-333
C:262-333
71
72
1.10
ENST00000262160
10
ENSE00001248481
chr18:
45372171-45372034
138
SMAD2_HUMAN
333-379
47
2
A:333-379
C:333-379
47
47
1.11
ENST00000262160
11
ENSE00001598119
chr18:
45371855-45371711
145
SMAD2_HUMAN
379-427
49
2
A:379-427
C:379-423
49
45
1.12b
ENST00000262160
12b
ENSE00001949705
chr18:
45368321-45357922
10400
SMAD2_HUMAN
427-467
41
2
A:427-456
C:428-456
30
29
2.2b
ENST00000371591
2b
ENSE00001455603
chr1:
52682052-52682146
95
ZFYV9_HUMAN
-
0
0
-
-
2.3
ENST00000371591
3
ENSE00001233936
chr1:
52698843-52698948
106
ZFYV9_HUMAN
1-24
24
0
-
-
2.4
ENST00000371591
4
ENSE00001140996
chr1:
52703160-52705267
2108
ZFYV9_HUMAN
24-726
703
0
-
-
2.5a
ENST00000371591
5a
ENSE00001140989
chr1:
52729445-52729544
100
ZFYV9_HUMAN
727-760
34
0
-
-
2.6
ENST00000371591
6
ENSE00001030124
chr1:
52732327-52732503
177
ZFYV9_HUMAN
760-819
60
2
B:669-709
D:669-707
41
39
2.7
ENST00000371591
7
ENSE00001030120
chr1:
52734135-52734304
170
ZFYV9_HUMAN
819-875
57
0
-
-
2.8
ENST00000371591
8
ENSE00001030105
chr1:
52740136-52740256
121
ZFYV9_HUMAN
876-916
41
0
-
-
2.9
ENST00000371591
9
ENSE00001030109
chr1:
52744164-52744286
123
ZFYV9_HUMAN
916-957
42
0
-
-
2.10
ENST00000371591
10
ENSE00001030112
chr1:
52747333-52747488
156
ZFYV9_HUMAN
957-1009
53
0
-
-
2.11
ENST00000371591
11
ENSE00001064551
chr1:
52759125-52759349
225
ZFYV9_HUMAN
1009-1084
76
0
-
-
2.12
ENST00000371591
12
ENSE00001064557
chr1:
52761567-52761649
83
ZFYV9_HUMAN
1084-1111
28
0
-
-
2.13
ENST00000371591
13
ENSE00001157067
chr1:
52769493-52769597
105
ZFYV9_HUMAN
1112-1146
35
0
-
-
2.14
ENST00000371591
14
ENSE00001064556
chr1:
52798440-52798590
151
ZFYV9_HUMAN
1147-1197
51
0
-
-
2.15a
ENST00000371591
15a
ENSE00001064560
chr1:
52800360-52800440
81
ZFYV9_HUMAN
1197-1224
28
0
-
-
2.16
ENST00000371591
16
ENSE00001191836
chr1:
52803444-52803606
163
ZFYV9_HUMAN
1224-1278
55
0
-
-
2.17
ENST00000371591
17
ENSE00001191763
chr1:
52805798-52805903
106
ZFYV9_HUMAN
1278-1313
36
0
-
-
2.18
ENST00000371591
18
ENSE00001352195
chr1:
52810440-52810616
177
ZFYV9_HUMAN
1314-1372
59
0
-
-
2.19c
ENST00000371591
19c
ENSE00001455602
chr1:
52811732-52812358
627
ZFYV9_HUMAN
1373-1425
53
0
-
-
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1deva_ (A:)
1b: SCOP_d1devc_ (C:)
2a: SCOP_d1devb_ (B:)
2b: SCOP_d1devd_ (D:)
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(
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SMAD/FHA domain
(62)
Superfamily
:
SMAD/FHA domain
(62)
Family
:
SMAD domain
(13)
Protein domain
:
Smad2 MH2 domain
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1deva_
A:
1b
d1devc_
C:
Class
:
Peptides
(792)
Fold
:
Smad-binding domain of Sara
(2)
Superfamily
:
Smad-binding domain of Sara
(2)
Family
:
Smad-binding domain of Sara
(2)
Protein domain
:
Smad-binding domain of Sara
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1devb_
B:
2b
d1devd_
D:
[
close SCOP info
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1devB00 (B:669-709)
1b: CATH_1devD00 (D:669-707)
2a: CATH_1devA00 (A:263-456)
2b: CATH_1devC00 (C:261-456)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Smad Anchor For Receptor Activation; Chain B
(1)
Homologous Superfamily
:
Smad Anchor For Receptor Activation; Chain B
(1)
Human (Homo sapiens)
(1)
1a
1devB00
B:669-709
1b
1devD00
D:669-707
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Tumour Suppressor Smad4
(52)
Homologous Superfamily
:
[code=2.60.200.10, no name defined]
(17)
Human (Homo sapiens)
(15)
2a
1devA00
A:263-456
2b
1devC00
C:261-456
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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