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Asym. Unit
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Asym.Unit (22 KB)
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(1)
Title
:
SOLUTION STRUCTURE OF THE TYPE I DOCKERIN DOMAIN FROM THE CLOSTRIDIUM THERMOCELLUM CELLULOSOME (MINIMIZED AVERAGE STRUCTURE)
Authors
:
B. L. Lytle, B. F. Volkman, W. M. Westler, M. P. Heckman, J. H. D. Wu
Date
:
31 Oct 99 (Deposition) - 04 Apr 01 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Cellulose Degradation, Cellulosome, Calcium-Binding, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
B. L. Lytle, B. F. Volkman, W. M. Westler, M. P. Heckman, J. H. Wu
Solution Structure Of A Type I Dockerin Domain, A Novel Prokaryotic, Extracellular Calcium-Binding Domain.
J. Mol. Biol. V. 307 745 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
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No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: I (AUTHOR)
4: II (AUTHOR)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:8 , ASN A:10 , ASP A:12 , GLY A:13 , LYS A:14 , ASP A:19
BINDING SITE FOR RESIDUE CA A 72
2
AC2
SOFTWARE
ASP A:40 , LEU A:41 , ASN A:42 , ASP A:44 , ARG A:46 , ASP A:51
BINDING SITE FOR RESIDUE CA A 73
3
I
AUTHOR
ASP A:8 , VAL A:9 , ASN A:10 , ASP A:11 , ASP A:12 , GLY A:13 , LYS A:14 , VAL A:15 , ASN A:16 , SER A:17 , THR A:18 , ASP A:19
FIRST PREDICTED CA2+ BINDING LOOP
4
II
AUTHOR
ASP A:40 , LEU A:41 , ASN A:42 , GLU A:43 , ASP A:44 , GLY A:45 , ARG A:46 , VAL A:47 , ASN A:48 , SER A:49 , THR A:50 , ASP A:51
SECOND PREDICTED CA2+ BINDING LOOP
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: DOCKERIN (A:2-68,A:2-68)
2: CLOS_CELLULOSOME_RPT (A:8-27|A:40-59,A:8-27|A:40-59)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DOCKERIN
PS51766
Dockerin domain profile.
GUNS_CLOTH
673-739
1
A:2-68
GUNS_CLOTM
673-739
1
A:2-68
2
CLOS_CELLULOSOME_RPT
PS00448
Clostridium cellulosome enzymes repeated domain signature.
GUNS_CLOTH
679-698
711-730
2
A:8-27
A:40-59
GUNS_CLOTM
679-698
711-730
2
A:8-27
A:40-59
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d1daqa_ (A:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Type I dockerin domain
(11)
Superfamily
:
Type I dockerin domain
(11)
Family
:
Type I dockerin domain
(6)
Protein domain
:
Cellulosome endoglucanase SS
(2)
Clostridium thermocellum [TaxId: 1515]
(2)
1a
d1daqa_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1daqA00 (A:1-71)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Type 1 dockerin domain
(2)
Homologous Superfamily
:
Type 1 dockerin domain
(2)
Clostridium thermocellum. Organism_taxid: 1515.
(2)
1a
1daqA00
A:1-71
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Pfam Domains
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Chain A
Asymmetric Unit 1
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