PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1CF1
Biol. Unit 1
Info
Asym.Unit (245 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (62 KB)
Biol.Unit 3 (64 KB)
Biol.Unit 4 (63 KB)
Biol.Unit 5 (120 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ARRESTIN FROM BOVINE ROD OUTER SEGMENTS
Authors
:
J. A. Hirsch, C. Schubert, V. V. Gurevich, P. B. Sigler
Date
:
23 Mar 99 (Deposition) - 16 Apr 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: B,D (1x)
Keywords
:
Visual Arrestin, Desensitisation Of The Visual Transduction Cascade, Binding To Acticated And Phosphorylated Rhodopsin, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Hirsch, C. Schubert, V. V. Gurevich, P. B. Sigler
The 2. 8 A Crystal Structure Of Visual Arrestin: A Model For Arrestin'S Regulation.
Cell(Cambridge, Mass. ) V. 97 257 1999
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ARRESTINS (A:65-83)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARRESTINS
PS00295
Arrestins signature.
ARRS_BOVIN
65-83
1
A:65-83
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1cf1a1 (A:10-182)
1b: SCOP_d1cf1a2 (A:183-393)
1c: SCOP_d1cf1b1 (B:9-182)
1d: SCOP_d1cf1b2 (B:183-385)
1e: SCOP_d1cf1c1 (C:7-182)
1f: SCOP_d1cf1c2 (C:183-393)
1g: SCOP_d1cf1d1 (D:9-182)
1h: SCOP_d1cf1d2 (D:183-386)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Arrestin/Vps26-like
(13)
Protein domain
:
Arrestin
(9)
Cow (Bos taurus), visual arrestin [TaxId: 9913]
(2)
1a
d1cf1a1
A:10-182
1b
d1cf1a2
A:183-393
1c
d1cf1b1
B:9-182
1d
d1cf1b2
B:183-385
1e
d1cf1c1
C:7-182
1f
d1cf1c2
C:183-393
1g
d1cf1d1
D:9-182
1h
d1cf1d2
D:183-386
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1cf1A02 (A:187-375)
1b: CATH_1cf1C02 (C:187-375)
1c: CATH_1cf1D02 (D:185-375)
1d: CATH_1cf1B02 (B:185-375)
2a: CATH_1cf1B01 (B:10-182)
2b: CATH_1cf1D01 (D:10-182)
2c: CATH_1cf1A01 (A:10-182)
2d: CATH_1cf1C01 (C:10-182)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.640, no name defined]
(10)
Cattle (Bos taurus)
(7)
1a
1cf1A02
A:187-375
1b
1cf1C02
C:187-375
1c
1cf1D02
D:185-375
1d
1cf1B02
B:185-375
Homologous Superfamily
:
[code=2.60.40.840, no name defined]
(10)
Cattle (Bos taurus)
(7)
2a
1cf1B01
B:10-182
2b
1cf1D01
D:10-182
2c
1cf1A01
A:10-182
2d
1cf1C01
C:10-182
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (245 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (62 KB)
Header - Biol.Unit 2
Biol.Unit 3 (64 KB)
Header - Biol.Unit 3
Biol.Unit 4 (63 KB)
Header - Biol.Unit 4
Biol.Unit 5 (120 KB)
Header - Biol.Unit 5
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1CF1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help