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Getting 'Exon' information from database.
1CDZ
Asym. Unit
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Asym.Unit (20 KB)
Biol.Unit 1 (16 KB)
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(1)
Title
:
BRCT DOMAIN FROM DNA-REPAIR PROTEIN XRCC1
Authors
:
X. Zhang, S. Morera, P. Bates, P. Whitehead, A. Coffer, K. Hainbucher, R. Nash, M. Sternberg, T. Lindahl, P. Freemont
Date
:
04 Mar 99 (Deposition) - 28 Feb 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Brct, Brca1, Xrcc1, Protein-Protein Interaction, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhang, S. Morera, P. A. Bates, P. C. Whitehead, A. I. Coffer, K. Hainbucher, R. A. Nash, M. J. Sternberg, T. Lindahl, P. S. Freemont
Structure Of An Xrcc1 Brct Domain: A New Protein-Protein Interaction Module.
Embo J. V. 17 6404 1998
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014780 (R22Q, chain A, )
2: VAR_014781 (R23W, chain A, )
3: VAR_014782 (Y39S, chain A, )
4: VAR_061727 (Y39Y, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014780
R
559
Q
XRCC1_HUMAN
Polymorphism
2307167
A
R
22
Q
2
UniProt
VAR_014781
R
560
W
XRCC1_HUMAN
Polymorphism
2307166
A
R
23
W
3
UniProt
VAR_014782
N
576
S
XRCC1_HUMAN
Polymorphism
2307177
A
Y
39
S
4
UniProt
VAR_061727
N
576
Y
XRCC1_HUMAN
Polymorphism
2682557
A
Y
39
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BRCT (-|A:1-92)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BRCT
PS50172
BRCT domain profile.
XRCC1_HUMAN
315-403
538-629
1
-
A:1-92
[
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Exons
(4, 4)
Info
All Exons
Exon 1.15 (A:1-4)
Exon 1.16 (A:4-34)
Exon 1.17 (A:34-59)
Exon 1.18 (A:60-96)
View:
Select:
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All Exon Boundaries
1: Boundary 1.14/1.15
2: Boundary 1.15/1.16
3: Boundary 1.16/1.17
4: Boundary 1.17/1.18
5: Boundary 1.18/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000262887
1
ENSE00001213791
chr19:
44079730-44079560
171
XRCC1_HUMAN
1-17
17
0
-
-
1.2
ENST00000262887
2
ENSE00000897653
chr19:
44079154-44079062
93
XRCC1_HUMAN
18-48
31
0
-
-
1.3
ENST00000262887
3
ENSE00000710723
chr19:
44065172-44065062
111
XRCC1_HUMAN
49-85
37
0
-
-
1.4
ENST00000262887
4
ENSE00000710692
chr19:
44058956-44058798
159
XRCC1_HUMAN
86-138
53
0
-
-
1.5
ENST00000262887
5
ENSE00000710666
chr19:
44057835-44057761
75
XRCC1_HUMAN
139-163
25
0
-
-
1.6
ENST00000262887
6
ENSE00000847423
chr19:
44057664-44057553
112
XRCC1_HUMAN
164-201
38
0
-
-
1.7
ENST00000262887
7
ENSE00000710635
chr19:
44057243-44057134
110
XRCC1_HUMAN
201-237
37
0
-
-
1.8
ENST00000262887
8
ENSE00000710618
chr19:
44057060-44056949
112
XRCC1_HUMAN
238-275
38
0
-
-
1.9
ENST00000262887
9
ENSE00000710592
chr19:
44056427-44056169
259
XRCC1_HUMAN
275-361
87
0
-
-
1.10b
ENST00000262887
10b
ENSE00000710568
chr19:
44055839-44055723
117
XRCC1_HUMAN
361-400
40
0
-
-
1.11a
ENST00000262887
11a
ENSE00000710543
chr19:
44051129-44051036
94
XRCC1_HUMAN
400-431
32
0
-
-
1.13
ENST00000262887
13
ENSE00001674062
chr19:
44050879-44050747
133
XRCC1_HUMAN
432-476
45
0
-
-
1.14
ENST00000262887
14
ENSE00001737651
chr19:
44050258-44050204
55
XRCC1_HUMAN
476-494
19
0
-
-
1.15
ENST00000262887
15
ENSE00001695855
chr19:
44050109-44049970
140
XRCC1_HUMAN
494-541
48
1
A:1-4
4
1.16
ENST00000262887
16
ENSE00001614503
chr19:
44048386-44048296
91
XRCC1_HUMAN
541-571
31
1
A:4-34
31
1.17
ENST00000262887
17
ENSE00001797037
chr19:
44047839-44047764
76
XRCC1_HUMAN
571-596
26
1
A:34-59
26
1.18
ENST00000262887
18
ENSE00001669136
chr19:
44047657-44047464
194
XRCC1_HUMAN
597-633
37
1
A:60-96
37
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1cdza_ (A:)
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(
)
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)
Folds
(
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(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
BRCT domain
(29)
Superfamily
:
BRCT domain
(29)
Family
:
DNA-repair protein XRCC1
(4)
Protein domain
:
DNA-repair protein XRCC1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1cdza_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1cdzA00 (A:1-96)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.10190, no name defined]
(24)
Human (Homo sapiens)
(22)
1a
1cdzA00
A:1-96
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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