PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1CB5
Asym. Unit
Info
Asym.Unit (226 KB)
Biol.Unit 1 (439 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
HUMAN BLEOMYCIN HYDROLASE.
Authors
:
P. A. O'Farrell, F. Gonzalez, W. Zheng, S. A. Johnston, L. Joshua-Tor
Date
:
01 Mar 99 (Deposition) - 01 Mar 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.59
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Hydrolase, Aminopeptidase, Cysteine Protease, Self- Compartmentalizing, Bleomycin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. A. O'Farrell, F. Gonzalez, W. Zheng, S. A. Johnston, L. Joshua-Tor
Crystal Structure Of Human Bleomycin Hydrolase, A Self-Compartmentalizing Cysteine Protease.
Structure Fold. Des. V. 7 619 1999
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_010896 (I443V, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010896
I
443
V
BLMH_HUMAN
Polymorphism
1050565
A/B/C
I
443
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: THIOL_PROTEASE_CYS (A:67-78,B:67-78,C:67-78)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
BLMH_HUMAN
67-78
3
A:67-78
B:67-78
C:67-78
[
close PROSITE info
]
Exons
(12, 36)
Info
All Exons
Exon 1.1 (A:2-5 | B:2-5 | C:2-5)
Exon 1.2 (A:5-71 | B:5-71 | C:5-71)
Exon 1.3 (A:71-107 | B:71-107 | C:71-107)
Exon 1.4 (A:108-155 | B:108-155 | C:108-155)
Exon 1.5 (A:155-184 | B:155-184 | C:155-184)
Exon 1.6 (A:185-215 | B:185-215 | C:185-215)
Exon 1.7 (A:216-267 | B:216-267 | C:216-267)
Exon 1.8 (A:268-320 | B:268-320 | C:268-320)
Exon 1.9 (A:321-343 | B:321-343 | C:321-343)
Exon 1.10 (A:343-382 | B:343-382 | C:343-382)
Exon 1.11 (A:383-406 | B:383-406 | C:383-406)
Exon 1.12 (A:406-454 | B:406-454 | C:406-454)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000261714
1
ENSE00002170280
chr17:
28619074-28618825
250
BLMH_HUMAN
1-5
5
3
A:2-5
B:2-5
C:2-5
4
4
4
1.2
ENST00000261714
2
ENSE00001607651
chr17:
28618526-28618329
198
BLMH_HUMAN
5-71
67
3
A:5-71
B:5-71
C:5-71
67
67
67
1.3
ENST00000261714
3
ENSE00000947605
chr17:
28616500-28616391
110
BLMH_HUMAN
71-107
37
3
A:71-107
B:71-107
C:71-107
37
37
37
1.4
ENST00000261714
4
ENSE00000947606
chr17:
28614965-28614824
142
BLMH_HUMAN
108-155
48
3
A:108-155
B:108-155
C:108-155
48
48
48
1.5
ENST00000261714
5
ENSE00000947607
chr17:
28613920-28613832
89
BLMH_HUMAN
155-184
30
3
A:155-184
B:155-184
C:155-184
30
30
30
1.6
ENST00000261714
6
ENSE00000947608
chr17:
28612498-28612406
93
BLMH_HUMAN
185-215
31
3
A:185-215
B:185-215
C:185-215
31
31
31
1.7
ENST00000261714
7
ENSE00000947609
chr17:
28601215-28601060
156
BLMH_HUMAN
216-267
52
3
A:216-267
B:216-267
C:216-267
52
52
52
1.8
ENST00000261714
8
ENSE00000947610
chr17:
28599917-28599759
159
BLMH_HUMAN
268-320
53
3
A:268-320
B:268-320
C:268-320
53
53
53
1.9
ENST00000261714
9
ENSE00000947611
chr17:
28599646-28599579
68
BLMH_HUMAN
321-343
23
3
A:321-343
B:321-343
C:321-343
23
23
23
1.10
ENST00000261714
10
ENSE00001114333
chr17:
28598406-28598289
118
BLMH_HUMAN
343-382
40
3
A:343-382
B:343-382
C:343-382
40
40
40
1.11
ENST00000261714
11
ENSE00000708897
chr17:
28593972-28593903
70
BLMH_HUMAN
383-406
24
3
A:383-406
B:383-406
C:383-406
24
24
24
1.12
ENST00000261714
12
ENSE00001250865
chr17:
28576186-28575223
964
BLMH_HUMAN
406-455
50
3
A:406-454
B:406-454
C:406-454
49
49
49
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1cb5a_ (A:)
1b: SCOP_d1cb5b_ (B:)
1c: SCOP_d1cb5c_ (C:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Papain-like
(200)
Protein domain
:
Bleomycin hydrolase
(11)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1cb5a_
A:
1b
d1cb5b_
B:
1c
d1cb5c_
C:
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1cb5A01 (A:54-454)
1b: CATH_1cb5B01 (B:54-454)
1c: CATH_1cb5C01 (C:54-454)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Human (Homo sapiens)
(92)
1a
1cb5A01
A:54-454
1b
1cb5B01
B:54-454
1c
1cb5C01
C:54-454
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (226 KB)
Header - Asym.Unit
Biol.Unit 1 (439 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1CB5
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help