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1C9B
Biol. Unit 2
Info
Asym.Unit (391 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (82 KB)
Biol.Unit 3 (81 KB)
Biol.Unit 4 (81 KB)
Biol.Unit 5 (81 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A HUMAN TBP CORE DOMAIN-HUMAN TFIIB CORE DOMAIN COMPLEX BOUND TO AN EXTENDED, MODIFIED ADENOVIRAL MAJOR LATE PROMOTER (ADMLP)
Authors
:
F. T. F. Tsai, P. B. Sigler
Date
:
01 Aug 99 (Deposition) - 10 Jan 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Biol. Unit 5: Q,R,S,T (1x)
Keywords
:
Protein-Dna Complex, Cyclin-Like Fold, Helix-Turn-Helix, Tata-Box, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. T. Tsai, P. B. Sigler
Structural Basis Of Preinitiation Complex Assembly On Human Pol Ii Promoters.
Embo J. V. 19 25 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_035722 (R132Q, chain E, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035722
R
132
Q
TF2B_HUMAN
Unclassified
---
E
R
132
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TFIIB (E:153-168,E:247-262)
2: TFIID (F:192-241,F:283-332)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TFIIB
PS00782
Transcription factor TFIIB repeat signature.
TF2B_HUMAN
153-168
247-262
2
-
E:153-168
-
-
-
-
E:247-262
-
-
-
2
TFIID
PS00351
Transcription factor TFIID repeat signature.
TBP_HUMAN
192-241
283-332
2
-
F:192-241
-
-
-
-
F:283-332
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 20)
Info
All SCOP Domains
1a: SCOP_d1c9ba1 (A:110-207)
1b: SCOP_d1c9bq1 (Q:110-207)
1c: SCOP_d1c9bq2 (Q:208-316)
1d: SCOP_d1c9ba2 (A:208-316)
1e: SCOP_d1c9be1 (E:110-207)
1f: SCOP_d1c9be2 (E:208-316)
1g: SCOP_d1c9bi1 (I:110-207)
1h: SCOP_d1c9bi2 (I:208-316)
1i: SCOP_d1c9bm1 (M:110-207)
1j: SCOP_d1c9bm2 (M:208-316)
2a: SCOP_d1c9bb1 (B:158-252)
2b: SCOP_d1c9bj1 (J:158-252)
2c: SCOP_d1c9bj2 (J:253-337)
2d: SCOP_d1c9bn1 (N:158-252)
2e: SCOP_d1c9bn2 (N:253-337)
2f: SCOP_d1c9br1 (R:158-252)
2g: SCOP_d1c9br2 (R:253-337)
2h: SCOP_d1c9bb2 (B:253-337)
2i: SCOP_d1c9bf1 (F:158-252)
2j: SCOP_d1c9bf2 (F:253-337)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cyclin-like
(137)
Superfamily
:
Cyclin-like
(137)
Family
:
Transcription factor IIB (TFIIB), core domain
(6)
Protein domain
:
Transcription factor IIB (TFIIB), core domain
(6)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1c9ba1
A:110-207
1b
d1c9bq1
Q:110-207
1c
d1c9bq2
Q:208-316
1d
d1c9ba2
A:208-316
1e
d1c9be1
E:110-207
1f
d1c9be2
E:208-316
1g
d1c9bi1
I:110-207
1h
d1c9bi2
I:208-316
1i
d1c9bm1
M:110-207
1j
d1c9bm2
M:208-316
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
TATA-box binding protein-like
(70)
Family
:
TATA-box binding protein (TBP), C-terminal domain
(29)
Protein domain
:
TATA-box binding protein (TBP), C-terminal domain
(29)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d1c9bb1
B:158-252
2b
d1c9bj1
J:158-252
2c
d1c9bj2
J:253-337
2d
d1c9bn1
N:158-252
2e
d1c9bn2
N:253-337
2f
d1c9br1
R:158-252
2g
d1c9br2
R:253-337
2h
d1c9bb2
B:253-337
2i
d1c9bf1
F:158-252
2j
d1c9bf2
F:253-337
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CATH Domains
(2, 20)
Info
all CATH domains
1a: CATH_1c9bB01 (B:159-169,B:256-337)
1b: CATH_1c9bF01 (F:159-169,F:256-337)
1c: CATH_1c9bJ01 (J:159-169,J:256-337)
1d: CATH_1c9bN01 (N:159-169,N:256-337)
1e: CATH_1c9bR01 (R:159-169,R:256-337)
1f: CATH_1c9bB02 (B:170-255)
1g: CATH_1c9bF02 (F:170-255)
1h: CATH_1c9bJ02 (J:170-255)
1i: CATH_1c9bN02 (N:170-255)
1j: CATH_1c9bR02 (R:170-255)
2a: CATH_1c9bA02 (A:210-315)
2b: CATH_1c9bI02 (I:210-315)
2c: CATH_1c9bM02 (M:210-315)
2d: CATH_1c9bQ02 (Q:210-315)
2e: CATH_1c9bA01 (A:113-209)
2f: CATH_1c9bE01 (E:113-209)
2g: CATH_1c9bI01 (I:113-209)
2h: CATH_1c9bM01 (M:113-209)
2i: CATH_1c9bQ01 (Q:113-209)
2j: CATH_1c9bE02 (E:210-315)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
TATA-Binding Protein
(118)
Homologous Superfamily
:
TATA-Binding Protein
(37)
[unclassified]
(13)
1a
1c9bB01
B:159-169,B:256-337
1b
1c9bF01
F:159-169,F:256-337
1c
1c9bJ01
J:159-169,J:256-337
1d
1c9bN01
N:159-169,N:256-337
1e
1c9bR01
R:159-169,R:256-337
1f
1c9bB02
B:170-255
1g
1c9bF02
F:170-255
1h
1c9bJ02
J:170-255
1i
1c9bN02
N:170-255
1j
1c9bR02
R:170-255
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cyclin A; domain 1
(136)
Homologous Superfamily
:
[code=1.10.472.10, no name defined]
(99)
[unclassified]
(5)
2a
1c9bA02
A:210-315
2b
1c9bI02
I:210-315
2c
1c9bM02
M:210-315
2d
1c9bQ02
Q:210-315
2e
1c9bA01
A:113-209
2f
1c9bE01
E:113-209
2g
1c9bI01
I:113-209
2h
1c9bM01
M:113-209
2i
1c9bQ01
Q:113-209
2j
1c9bE02
E:210-315
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Pfam Domains
(0, 0)
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Asym.Unit (391 KB)
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