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1BQM
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (161 KB)
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(1)
Title
:
HIV-1 RT/HBY 097
Authors
:
Y. Hsiou, K. Das, J. Ding, E. Arnold
Date
:
17 Aug 98 (Deposition) - 06 Jan 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nucleotidyltransferase, Aids, Rna-Directed Dna Polymerase, Hiv-1 Rt/Hby 097, Drug-Resistant Mutant
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Hsiou, K. Das, J. Ding, A. D. Clark Jr. , J. P. Kleim, M. Rosner, I. Winkler, G. Riess, S. H. Hughes, E. Arnold
Structures Of Tyr188Leu Mutant And Wild-Type Hiv-1 Reverse Transcriptase Complexed With The Non-Nucleoside Inhibitor Hby 097: Inhibitor Flexibility Is A Useful Design Feature For Reducing Drug Resistance.
J. Mol. Biol. V. 284 313 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (S)-4-ISOPROPOXYCARBONYL-6-METHOXY... (HBYa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
HBY
1
Ligand/Ion
(S)-4-ISOPROPOXYCARBONYL-6-METHOXY-3-METHYLTHIOMETHYL-3,4-DIHYDROQUINOXALIN-2(1H)-THIONE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:95 , LEU A:100 , LYS A:101 , VAL A:179 , TYR A:188 , VAL A:189 , GLY A:190 , PRO A:225 , PHE A:227 , TRP A:229 , LEU A:234 , TYR A:318
BINDING SITE FOR RESIDUE HBY A 557
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SAPs(SNPs)/Variants
(5, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POL_HV1B1_003 (K172R, chain A/B, )
2: VAR_POL_HV1B1_004 (K451R, chain A, )
3: VAR_POL_HV1B1_005 (V458L, chain A, )
4: VAR_POL_HV1B1_006 (K512Q, chain A, )
5: VAR_POL_HV1B1_007 (E529Q, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POL_HV1B1_003
*
K
771
R
POL_HV1B1
---
---
A/B
K
172
R
2
UniProt
VAR_POL_HV1B1_004
*
K
1050
R
POL_HV1B1
---
---
A
K
451
R
3
UniProt
VAR_POL_HV1B1_005
*
V
1057
L
POL_HV1B1
---
---
A
V
458
L
4
UniProt
VAR_POL_HV1B1_006
*
K
1111
Q
POL_HV1B1
---
---
A
K
512
Q
5
UniProt
VAR_POL_HV1B1_007
*
E
1128
Q
POL_HV1B1
---
---
A
E
529
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: RT_POL (A:44-234,B:44-234)
2: RNASE_H (A:434-556)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RT_POL
PS50878
Reverse transcriptase (RT) catalytic domain profile.
POL_HV1B1
643-833
2
A:44-234
B:44-234
2
RNASE_H
PS50879
RNase H domain profile.
POL_HV1B1
1033-1156
1
A:434-556
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1bqma1 (A:430-556)
2a: SCOP_d1bqma2 (A:1-429)
2b: SCOP_d1bqmb_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Ribonuclease H
(190)
Protein domain
:
HIV RNase H (Domain of reverse transcriptase)
(110)
Human immunodeficiency virus type 1 [TaxId: 11676]
(101)
1a
d1bqma1
A:430-556
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Reverse transcriptase
(217)
Protein domain
:
HIV-1 reverse transcriptase
(161)
Human immunodeficiency virus type 1 [TaxId: 11676]
(138)
2a
d1bqma2
A:1-429
2b
d1bqmb_
B:
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_1bqmB02 (B:99-123,B:165-233)
1b: CATH_1bqmA02 (A:91-115,A:157-225)
1c: CATH_1bqmA03 (A:226-319)
1d: CATH_1bqmB03 (B:234-319)
1e: CATH_1bqmA04 (A:320-426)
1f: CATH_1bqmB04 (B:320-426)
2a: CATH_1bqmA05 (A:427-556)
3a: CATH_1bqmA01 (A:1-90,A:116-156)
3b: CATH_1bqmB01 (B:9-98,B:124-164)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
Human immunodeficiency virus 1. Organism_taxid: 11676. Strain: bh10. Cell_line: 293.
(2)
1a
1bqmB02
B:99-123,B:165-233
1b
1bqmA02
A:91-115,A:157-225
1c
1bqmA03
A:226-319
1d
1bqmB03
B:234-319
1e
1bqmA04
A:320-426
1f
1bqmB04
B:320-426
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Human immunodeficiency virus 1. Organism_taxid: 11676. Strain: bh10. Cell_line: 293.
(2)
2a
1bqmA05
A:427-556
Architecture
:
Roll
(3276)
Topology
:
HIV Type 1 Reverse Transcriptase; Chain A, domain 1
(164)
Homologous Superfamily
:
HIV Type 1 Reverse Transcriptase, subunit A, domain 1
(164)
Human immunodeficiency virus 1. Organism_taxid: 11676. Strain: bh10. Cell_line: 293.
(2)
3a
1bqmA01
A:1-90,A:116-156
3b
1bqmB01
B:9-98,B:124-164
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (166 KB)
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