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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
1BHG
Asym. Unit
Info
Asym.Unit (210 KB)
Biol.Unit 1 (405 KB)
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(1)
Title
:
HUMAN BETA-GLUCURONIDASE AT 2.6 A RESOLUTION
Authors
:
S. Jain, W. B. Drendel
Date
:
04 Mar 96 (Deposition) - 17 Sep 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.53
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Lysosomal Enzyme, Acid Hydrolase, Glycosidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Jain, W. B. Drendel, Z. W. Chen, F. S. Mathews, W. S. Sly, J. H. Grubb
Structure Of Human Beta-Glucuronidase Reveals Candidate Lysosomal Targeting And Active-Site Motifs.
Nat. Struct. Biol. V. 3 375 1996
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 18)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
MAN
12
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:97 , TRP A:98 , ASN A:173 , ASN A:174 , NAG A:652
BINDING SITE FOR RESIDUE NAG A 651
02
AC2
SOFTWARE
ASP A:53 , ASN A:54 , ILE A:186 , TYR A:188 , NAG A:651 , BMA A:653 , MAN A:654 , MAN A:655
BINDING SITE FOR RESIDUE NAG A 652
03
AC3
SOFTWARE
GLN A:187 , TYR A:188 , NAG A:652 , MAN A:654 , MAN A:655
BINDING SITE FOR RESIDUE BMA A 653
04
AC4
SOFTWARE
NAG A:652 , BMA A:653 , MAN A:657 , MAN A:658
BINDING SITE FOR RESIDUE MAN A 654
05
AC5
SOFTWARE
PRO A:178 , THR A:185 , ILE A:186 , GLN A:187 , NAG A:652 , BMA A:653 , MAN A:656
BINDING SITE FOR RESIDUE MAN A 655
06
AC6
SOFTWARE
MAN A:655
BINDING SITE FOR RESIDUE MAN A 656
07
AC7
SOFTWARE
ARG A:55 , PRO A:475 , MAN A:654
BINDING SITE FOR RESIDUE MAN A 657
08
AC8
SOFTWARE
ASP A:53 , MAN A:654 , MAN A:659
BINDING SITE FOR RESIDUE MAN A 658
09
AC9
SOFTWARE
LYS A:197 , GLY A:198 , GLN A:247 , MAN A:658
BINDING SITE FOR RESIDUE MAN A 659
10
BC1
SOFTWARE
ARG B:55 , GLY B:97 , TRP B:98 , ASN B:173 , THR B:175 , NAG B:652
BINDING SITE FOR RESIDUE NAG B 651
11
BC2
SOFTWARE
ASN B:54 , ARG B:55 , THR B:177 , ILE B:186 , TYR B:188 , NAG B:651 , BMA B:653 , MAN B:654 , MAN B:657
BINDING SITE FOR RESIDUE NAG B 652
12
BC3
SOFTWARE
ILE B:186 , TYR B:188 , GLN B:279 , NAG B:652 , MAN B:654 , MAN B:655 , MAN B:657
BINDING SITE FOR RESIDUE BMA B 653
13
BC4
SOFTWARE
TYR B:188 , ASN B:245 , GLN B:247 , GLN B:279 , NAG B:652 , BMA B:653 , MAN B:657 , MAN B:658
BINDING SITE FOR RESIDUE MAN B 654
14
BC5
SOFTWARE
THR B:185 , BMA B:653 , MAN B:656
BINDING SITE FOR RESIDUE MAN B 655
15
BC6
SOFTWARE
GLN B:279 , MAN B:655
BINDING SITE FOR RESIDUE MAN B 656
16
BC7
SOFTWARE
SER B:236 , ASN B:245 , NAG B:652 , BMA B:653 , MAN B:654
BINDING SITE FOR RESIDUE MAN B 657
17
BC8
SOFTWARE
ASN B:54 , GLN B:247 , MAN B:654 , MAN B:659
BINDING SITE FOR RESIDUE MAN B 658
18
BC9
SOFTWARE
LYS B:197 , GLY B:198 , GLN B:277 , MAN B:658
BINDING SITE FOR RESIDUE MAN B 659
[
close Site info
]
SAPs(SNPs)/Variants
(38, 76)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_058511 (P30S, chain A/B, )
02: VAR_037914 (C38G, chain A/B, )
03: VAR_037915 (S52F, chain A/B, )
04: VAR_037916 (G136R, chain A/B, )
05: VAR_037917 (P148S, chain A/B, )
06: VAR_037918 (E150K, chain A/B, )
07: VAR_058512 (D152G, chain A/B, )
08: VAR_037919 (D152N, chain A/B, )
09: VAR_037920 (L176F, chain A/B, )
10: VAR_003196 (R216W, chain A/B, )
11: VAR_058513 (L243P, chain A/B, )
12: VAR_037921 (Y320C, chain A/B, )
13: VAR_037922 (Y320S, chain A/B, )
14: VAR_058514 (N339S, chain A/B, )
15: VAR_037923 (K350N, chain A/B, )
16: VAR_037924 (H351Y, chain A/B, )
17: VAR_003197 (A354V, chain A/B, )
18: VAR_058516 (D362N, chain A/B, )
19: VAR_058517 (P364L, chain A/B, )
20: VAR_037925 (R374C, chain A/B, )
21: VAR_055884 (L376F, chain A/B, )
22: VAR_003198 (R382C, chain A/B, )
23: VAR_037926 (R382H, chain A/B, )
24: VAR_037927 (P408S, chain A/B, )
25: VAR_037928 (P415L, chain A/B, )
26: VAR_037929 (R435P, chain A/B, )
27: VAR_037930 (R477W, chain A/B, )
28: VAR_037931 (Y495C, chain A/B, )
29: VAR_037932 (Y508C, chain A/B, )
30: VAR_058518 (E540K, chain A/B, )
31: VAR_037933 (G572D, chain A/B, )
32: VAR_037934 (R577L, chain A/B, )
33: VAR_037935 (K606N, chain A/B, )
34: VAR_058519 (G607A, chain A/B, )
35: VAR_003199 (R611W, chain A/B, )
36: VAR_003200 (A619V, chain A/B, )
37: VAR_037936 (Y626H, chain A/B, )
38: VAR_003201 (W627C, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_058511
P
30
S
BGLR_HUMAN
Disease (MPS7)
---
A/B
P
30
S
02
UniProt
VAR_037914
C
38
G
BGLR_HUMAN
Disease (MPS7)
---
A/B
C
38
G
03
UniProt
VAR_037915
S
52
F
BGLR_HUMAN
Disease (MPS7)
---
A/B
S
52
F
04
UniProt
VAR_037916
G
136
R
BGLR_HUMAN
Disease (MPS7)
---
A/B
G
136
R
05
UniProt
VAR_037917
P
148
S
BGLR_HUMAN
Disease (MPS7)
---
A/B
P
148
S
06
UniProt
VAR_037918
E
150
K
BGLR_HUMAN
Disease (MPS7)
---
A/B
E
150
K
07
UniProt
VAR_058512
D
152
G
BGLR_HUMAN
Disease (MPS7)
---
A/B
D
152
G
08
UniProt
VAR_037919
D
152
N
BGLR_HUMAN
Polymorphism
149606212
A/B
D
152
N
09
UniProt
VAR_037920
L
176
F
BGLR_HUMAN
Disease (MPS7)
---
A/B
L
176
F
10
UniProt
VAR_003196
R
216
W
BGLR_HUMAN
Disease (MPS7)
---
A/B
R
216
W
11
UniProt
VAR_058513
L
243
P
BGLR_HUMAN
Disease (MPS7)
---
A/B
L
243
P
12
UniProt
VAR_037921
Y
320
C
BGLR_HUMAN
Disease (MPS7)
---
A/B
Y
320
C
13
UniProt
VAR_037922
Y
320
S
BGLR_HUMAN
Disease (MPS7)
---
A/B
Y
320
S
14
UniProt
VAR_058514
N
339
S
BGLR_HUMAN
Disease (MPS7)
---
A/B
N
339
S
15
UniProt
VAR_037923
K
350
N
BGLR_HUMAN
Disease (MPS7)
121918182
A/B
K
350
N
16
UniProt
VAR_037924
H
351
Y
BGLR_HUMAN
Disease (MPS7)
191153460
A/B
H
351
Y
17
UniProt
VAR_003197
A
354
V
BGLR_HUMAN
Disease (MPS7)
---
A/B
A
354
V
18
UniProt
VAR_058516
D
362
N
BGLR_HUMAN
Disease (MPS7)
---
A/B
D
362
N
19
UniProt
VAR_058517
P
364
L
BGLR_HUMAN
Disease (MPS7)
---
A/B
P
364
L
20
UniProt
VAR_037925
R
374
C
BGLR_HUMAN
Disease (MPS7)
---
A/B
R
374
C
21
UniProt
VAR_055884
L
376
F
BGLR_HUMAN
Polymorphism
11559283
A/B
L
376
F
22
UniProt
VAR_003198
R
382
C
BGLR_HUMAN
Disease (MPS7)
---
A/B
R
382
C
23
UniProt
VAR_037926
R
382
H
BGLR_HUMAN
Disease (MPS7)
---
A/B
R
382
H
24
UniProt
VAR_037927
P
408
S
BGLR_HUMAN
Disease (MPS7)
---
A/B
P
408
S
25
UniProt
VAR_037928
P
415
L
BGLR_HUMAN
Disease (MPS7)
---
A/B
P
415
L
26
UniProt
VAR_037929
R
435
P
BGLR_HUMAN
Disease (MPS7)
---
A/B
R
435
P
27
UniProt
VAR_037930
R
477
W
BGLR_HUMAN
Disease (MPS7)
---
A/B
R
477
W
28
UniProt
VAR_037931
Y
495
C
BGLR_HUMAN
Disease (MPS7)
---
A/B
Y
495
C
29
UniProt
VAR_037932
Y
508
C
BGLR_HUMAN
Disease (MPS7)
---
A/B
Y
508
C
30
UniProt
VAR_058518
E
540
K
BGLR_HUMAN
Disease (MPS7)
---
A/B
E
540
K
31
UniProt
VAR_037933
G
572
D
BGLR_HUMAN
Disease (MPS7)
---
A/B
G
572
D
32
UniProt
VAR_037934
R
577
L
BGLR_HUMAN
Disease (MPS7)
---
A/B
R
577
L
33
UniProt
VAR_037935
K
606
N
BGLR_HUMAN
Disease (MPS7)
---
A/B
K
606
N
34
UniProt
VAR_058519
G
607
A
BGLR_HUMAN
Disease (MPS7)
---
A/B
G
607
A
35
UniProt
VAR_003199
R
611
W
BGLR_HUMAN
Disease (MPS7)
---
A/B
R
611
W
36
UniProt
VAR_003200
A
619
V
BGLR_HUMAN
Disease (MPS7)
---
A/B
A
619
V
37
UniProt
VAR_037936
Y
626
H
BGLR_HUMAN
Disease (MPS7)
---
A/B
Y
626
H
38
UniProt
VAR_003201
W
627
C
BGLR_HUMAN
Disease (MPS7)
---
A/B
W
627
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F2_1 (A:379-404,B:379-404)
2: GLYCOSYL_HYDROL_F2_2 (A:437-451,B:437-451)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F2_1
PS00719
Glycosyl hydrolases family 2 signature 1.
BGLR_HUMAN
379-404
2
A:379-404
B:379-404
2
GLYCOSYL_HYDROL_F2_2
PS00608
Glycosyl hydrolases family 2 acid/base catalyst.
BGLR_HUMAN
437-451
2
A:437-451
B:437-451
[
close PROSITE info
]
Exons
(12, 24)
Info
All Exons
Exon 1.1a (A:22-70 | B:22-70)
Exon 1.4b (A:71-132 | B:71-132)
Exon 1.5b (A:133-194 | B:133-194)
Exon 1.6c (A:194-242 | B:194-242)
Exon 1.7a (A:242-304 | B:242-304)
Exon 1.7e (A:305-355 | B:305-355)
Exon 1.7h (A:356-415 | B:356-415)
Exon 1.7l (A:415-464 | B:415-464)
Exon 1.8 (A:464-492 | B:464-492)
Exon 1.9b (A:493-551 | B:493-551)
Exon 1.10b (A:552-597 | B:552-597)
Exon 1.11d (A:597-632 | B:597-632)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.4b
03: Boundary 1.4b/1.5b
04: Boundary 1.5b/1.6c
05: Boundary 1.6c/1.7a
06: Boundary 1.7a/1.7e
07: Boundary 1.7e/1.7h
08: Boundary 1.7h/1.7l
09: Boundary 1.7l/1.8
10: Boundary 1.8/1.9b
11: Boundary 1.9b/1.10b
12: Boundary 1.10b/1.11d
13: Boundary 1.11d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000304895
1a
ENSE00001799401
chr7:
65447301-65446961
341
BGLR_HUMAN
1-70
70
2
A:22-70
B:22-70
49
49
1.4b
ENST00000304895
4b
ENSE00001655605
chr7:
65445396-65445211
186
BGLR_HUMAN
71-132
62
2
A:71-132
B:71-132
62
62
1.5b
ENST00000304895
5b
ENSE00001167655
chr7:
65444898-65444714
185
BGLR_HUMAN
133-194
62
2
A:133-194
B:133-194
62
62
1.6c
ENST00000304895
6c
ENSE00001767586
chr7:
65444528-65444386
143
BGLR_HUMAN
194-242
49
2
A:194-242
B:194-242
49
49
1.7a
ENST00000304895
7a
ENSE00001656522
chr7:
65441189-65441002
188
BGLR_HUMAN
242-304
63
2
A:242-304
B:242-304
63
63
1.7e
ENST00000304895
7e
ENSE00001675526
chr7:
65440058-65439906
153
BGLR_HUMAN
305-355
51
2
A:305-355
B:305-355
51
51
1.7h
ENST00000304895
7h
ENSE00001730820
chr7:
65439691-65439513
179
BGLR_HUMAN
356-415
60
2
A:356-415
B:356-415
60
60
1.7l
ENST00000304895
7l
ENSE00001762203
chr7:
65439428-65439282
147
BGLR_HUMAN
415-464
50
2
A:415-464
B:415-464
50
50
1.8
ENST00000304895
8
ENSE00001666571
chr7:
65435353-65435269
85
BGLR_HUMAN
464-492
29
2
A:464-492
B:464-492
29
29
1.9b
ENST00000304895
9b
ENSE00001596760
chr7:
65432894-65432718
177
BGLR_HUMAN
493-551
59
2
A:493-551
B:493-551
59
59
1.10b
ENST00000304895
10b
ENSE00001618495
chr7:
65429445-65429310
136
BGLR_HUMAN
552-597
46
2
A:552-597
B:552-597
46
46
1.11d
ENST00000304895
11d
ENSE00001131491
chr7:
65426050-65425671
380
BGLR_HUMAN
597-651
55
2
A:597-632
B:597-632
36
36
[
close EXON info
]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1bhga2 (A:22-225)
1b: SCOP_d1bhgb2 (B:22-225)
2a: SCOP_d1bhga1 (A:226-328)
2b: SCOP_d1bhgb1 (B:226-328)
3a: SCOP_d1bhga3 (A:329-632)
3b: SCOP_d1bhgb3 (B:329-632)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
beta-Galactosidase/glucuronidase, N-terminal domain
(49)
Protein domain
:
beta-Glucuronidase
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1bhga2
A:22-225
1b
d1bhgb2
B:22-225
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
beta-Galactosidase/glucuronidase domain
(79)
Family
:
beta-Galactosidase/glucuronidase domain
(49)
Protein domain
:
beta-Glucuronidase
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1bhga1
A:226-328
2b
d1bhgb1
B:226-328
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
beta-Glucuronidase, domain 3
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
3a
d1bhga3
A:329-632
3b
d1bhgb3
B:329-632
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1bhgA03 (A:329-631)
1b: CATH_1bhgB03 (B:329-631)
2a: CATH_1bhgA02 (A:225-328)
2b: CATH_1bhgB02 (B:225-328)
3a: CATH_1bhgA01 (A:22-224)
3b: CATH_1bhgB01 (B:22-224)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Human (Homo sapiens)
(94)
1a
1bhgA03
A:329-631
1b
1bhgB03
B:329-631
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.320, no name defined]
(46)
Human (Homo sapiens)
(2)
2a
1bhgA02
A:225-328
2b
1bhgB02
B:225-328
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
3a
1bhgA01
A:22-224
3b
1bhgB01
B:22-224
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