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1B34
Asym. Unit
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Asym.Unit (31 KB)
Biol.Unit 1 (27 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE D1D2 SUB-COMPLEX FROM THE HUMAN SNRNP CORE DOMAIN
Authors
:
S. Walke, R. J. Young, C. Kambach, J. M. Avis, E. De La Fortelle, J. Li, K
Date
:
17 Dec 98 (Deposition) - 13 Jan 00 (Release) - 07 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Snrnp, Splicing, Spliceosome, Sm, Core Snrnp Domain, Systemic Lupus Erythematosus, Sle, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
C. Kambach, S. Walke, R. Young, J. M. Avis, E. De La Fortelle, V. A. Raker, R. Luhrmann, J. Li, K. Nagai
Crystal Structures Of Two Sm Protein Complexes And Their Implications For The Assembly Of The Spliceosomal Snrnps.
Cell(Cambridge, Mass. ) V. 96 375 1999
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
(5, 5)
Info
All Exons
Exon 1.1 (A:2-5)
Exon 1.2 (A:5-31)
Exon 1.3 (A:31-81)
Exon 2.3a (B:26-61)
Exon 2.4 (B:61-118 (gaps))
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 2.1/2.3a
6: Boundary 2.3a/2.4
7: Boundary 2.4/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000300413
1
ENSE00001137497
chr18:
19192260-19192404
145
SMD1_HUMAN
1-5
5
1
A:2-5
4
1.2
ENST00000300413
2
ENSE00001109516
chr18:
19202686-19202762
77
SMD1_HUMAN
5-31
27
1
A:5-31
27
1.3
ENST00000300413
3
ENSE00001109513
chr18:
19203709-19203900
192
SMD1_HUMAN
31-95
65
1
A:31-81
51
1.4
ENST00000300413
4
ENSE00001109508
chr18:
19209023-19210204
1182
SMD1_HUMAN
95-119
25
0
-
-
2.1
ENST00000342669
1
ENSE00002150353
chr19:
46195442-46195145
298
SMD2_HUMAN
1-1
1
0
-
-
2.3a
ENST00000342669
3a
ENSE00001371016
chr19:
46191824-46191645
180
SMD2_HUMAN
1-61
61
1
B:26-61
36
2.4
ENST00000342669
4
ENSE00000858249
chr19:
46190985-46190719
267
SMD2_HUMAN
61-118
58
1
B:61-118 (gaps)
58
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1b34a_ (A:)
2a: SCOP_d1b34b_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Sm-like fold
(103)
Superfamily
:
Sm-like ribonucleoproteins
(95)
Family
:
Sm motif of small nuclear ribonucleoproteins, SNRNP
(31)
Protein domain
:
D1 core SNRNP protein
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1b34a_
A:
Protein domain
:
D2 core SNRNP protein
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d1b34b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1b34B00 (B:26-118)
1b: CATH_1b34A00 (A:2-81)
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.100, no name defined]
(40)
Human (Homo sapiens)
(2)
1a
1b34B00
B:26-118
1b
1b34A00
A:2-81
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (31 KB)
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