PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1ANN
Asym. Unit
Info
Asym.Unit (57 KB)
Biol.Unit 1 (53 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ANNEXIN IV
Authors
:
R. B. Sutton, S. R. Sprang
Date
:
21 Sep 95 (Deposition) - 29 Jan 96 (Release) - 12 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
32. 5Kd Calelectrin, Endonexin I, Lipocortin Iv, Chromobindin Iv, Protein Ii, Calcium-Phospholipid-Binding Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. B. Sutton, S. R. Sprang
Three Dimensional Structure Of Annexin Iv
Annexins: Molecular 1996 Structure To Cellular Function
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:257 , GLY A:259 , GLY A:261 , ASP A:301 , HOH A:379B
BINDING SITE FOR RESIDUE CA A 319
2
AC2
SOFTWARE
MET A:26 , GLY A:28 , GLY A:30 , GLU A:70 , HOH A:324B , HOH A:366A
BINDING SITE FOR RESIDUE CA A 320
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ANNEXIN (A:30-82|A:102-154|A:186-238|A:261-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANNEXIN
PS00223
Annexins repeated domain signature.
ANXA4_BOVIN
31-83
103-155
187-239
262-314
4
A:30-82
A:102-154
A:186-238
A:261-313
[
close PROSITE info
]
Exons
(11, 11)
Info
All Exons
Exon 1.3 (A:4-30)
Exon 1.4 (A:30-61)
Exon 1.8 (A:62-99)
Exon 1.10 (A:100-130)
Exon 1.11 (A:130-156)
Exon 1.12 (A:157-175)
Exon 1.13 (A:176-207)
Exon 1.14 (A:207-239)
Exon 1.15 (A:239-258)
Exon 1.16 (A:259-299)
Exon 1.17 (A:300-318)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.8
04: Boundary 1.8/1.10
05: Boundary 1.10/1.11
06: Boundary 1.11/1.12
07: Boundary 1.12/1.13
08: Boundary 1.13/1.14
09: Boundary 1.14/1.15
10: Boundary 1.15/1.16
11: Boundary 1.16/1.17
12: Boundary 1.17/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000001463
1
ENSBTAE00000263146
chr11:
70037752-70037802
51
ANXA4_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000001463
2
ENSBTAE00000396308
chr11:
70067098-70067149
52
ANXA4_BOVIN
1-1
1
0
-
-
1.3
ENSBTAT00000001463
3
ENSBTAE00000392060
chr11:
70080212-70080299
88
ANXA4_BOVIN
2-31
30
1
A:4-30
27
1.4
ENSBTAT00000001463
4
ENSBTAE00000011722
chr11:
70085722-70085816
95
ANXA4_BOVIN
31-62
32
1
A:30-61
32
1.8
ENSBTAT00000001463
8
ENSBTAE00000011723
chr11:
70088905-70089018
114
ANXA4_BOVIN
63-100
38
1
A:62-99
38
1.10
ENSBTAT00000001463
10
ENSBTAE00000422389
chr11:
70089849-70089939
91
ANXA4_BOVIN
101-131
31
1
A:100-130
31
1.11
ENSBTAT00000001463
11
ENSBTAE00000413811
chr11:
70091270-70091349
80
ANXA4_BOVIN
131-157
27
1
A:130-156
27
1.12
ENSBTAT00000001463
12
ENSBTAE00000378694
chr11:
70093470-70093526
57
ANXA4_BOVIN
158-176
19
1
A:157-175
19
1.13
ENSBTAT00000001463
13
ENSBTAE00000410867
chr11:
70101451-70101544
94
ANXA4_BOVIN
177-208
32
1
A:176-207
32
1.14
ENSBTAT00000001463
14
ENSBTAE00000384570
chr11:
70107309-70107404
96
ANXA4_BOVIN
208-240
33
1
A:207-239
33
1.15
ENSBTAT00000001463
15
ENSBTAE00000422047
chr11:
70107993-70108051
59
ANXA4_BOVIN
240-259
20
1
A:239-258
20
1.16
ENSBTAT00000001463
16
ENSBTAE00000396304
chr11:
70109006-70109128
123
ANXA4_BOVIN
260-300
41
1
A:259-299
41
1.17
ENSBTAT00000001463
17
ENSBTAE00000414557
chr11:
70112678-70113746
1069
ANXA4_BOVIN
301-319
19
1
A:300-318
19
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1anna_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Annexin
(61)
Superfamily
:
Annexin
(61)
Family
:
Annexin
(56)
Protein domain
:
Annexin IV
(3)
Cow (Bos taurus) [TaxId: 9913]
(3)
1a
d1anna_
A:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1annA02 (A:85-158)
1b: CATH_1annA04 (A:245-316)
1c: CATH_1annA03 (A:159-244)
1d: CATH_1annA01 (A:12-84)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Annexin V; domain 1
(80)
Homologous Superfamily
:
[code=1.10.220.10, no name defined]
(58)
Cattle (Bos taurus)
(4)
1a
1annA02
A:85-158
1b
1annA04
A:245-316
1c
1annA03
A:159-244
1d
1annA01
A:12-84
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (57 KB)
Header - Asym.Unit
Biol.Unit 1 (53 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1ANN
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help