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1AGR
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (80 KB)
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(1)
Title
:
COMPLEX OF ALF4-ACTIVATED GI-ALPHA-1 WITH RGS4
Authors
:
J. J. G. Tesmer, S. R. Sprang
Date
:
25 Mar 97 (Deposition) - 16 Jun 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,D,E,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: D,H (1x)
Keywords
:
Gi-Alpha-1, Hydrolase, Signal Transduction, Rgs4, Complex (Signal Transduction/Regulator), Gtp-Binding, Gtpase Activating Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Tesmer, D. M. Berman, A. G. Gilman, S. R. Sprang
Structure Of Rgs4 Bound To Alf4--Activated G(I Alpha1): Stabilization Of The Transition State For Gtp Hydrolysis.
Cell(Cambridge, Mass. ) V. 89 251 1997
(for further references see the
PDB file header
)
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: TETRAFLUOROALUMINATE ION (ALFa)
1b: TETRAFLUOROALUMINATE ION (ALFb)
2a: CITRIC ACID (CITa)
2b: CITRIC ACID (CITb)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALF
2
Ligand/Ion
TETRAFLUOROALUMINATE ION
2
CIT
2
Ligand/Ion
CITRIC ACID
3
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:47 , THR A:181 , GDP A:355 , ALF A:357 , HOH A:364 , HOH A:365
BINDING SITE FOR RESIDUE MG A 356
2
AC2
SOFTWARE
GLY A:42 , GLU A:43 , LYS A:46 , ARG A:178 , LYS A:180 , THR A:181 , VAL A:201 , GLY A:202 , GLY A:203 , GLN A:204 , GDP A:355 , MG A:356 , HOH A:359A , HOH A:364 , HOH A:365
BINDING SITE FOR RESIDUE ALF A 357
3
AC3
SOFTWARE
SER D:47 , THR D:181 , GDP D:355 , ALF D:357 , HOH D:365 , HOH D:366
BINDING SITE FOR RESIDUE MG D 356
4
AC4
SOFTWARE
GLY D:42 , GLU D:43 , LYS D:46 , ARG D:178 , LYS D:180 , THR D:181 , VAL D:201 , GLY D:202 , GLY D:203 , GLN D:204 , GDP D:355 , MG D:356 , HOH D:360D , HOH D:365 , HOH D:366
BINDING SITE FOR RESIDUE ALF D 357
5
AC5
SOFTWARE
GLU A:43 , SER A:44 , GLY A:45 , LYS A:46 , SER A:47 , THR A:48 , SER A:151 , LEU A:175 , ARG A:176 , THR A:177 , ARG A:178 , ASN A:269 , LYS A:270 , ASP A:272 , LEU A:273 , CYS A:325 , ALA A:326 , THR A:327 , MG A:356 , ALF A:357 , HOH A:360 , HOH A:361 , HOH A:364 , HOH A:365
BINDING SITE FOR RESIDUE GDP A 355
6
AC6
SOFTWARE
GLU A:275 , THR A:295 , TYR A:296 , GLU A:297 , HOH A:384 , LYS D:271 , HIS D:322 , PHE D:323 , ASN D:331 , PHE D:334 , HOH D:384
BINDING SITE FOR RESIDUE CIT A 358
7
AC7
SOFTWARE
GLU D:43 , SER D:44 , GLY D:45 , LYS D:46 , SER D:47 , THR D:48 , SER D:151 , LEU D:175 , ARG D:176 , THR D:177 , ARG D:178 , ASN D:269 , LYS D:270 , ASP D:272 , LEU D:273 , CYS D:325 , ALA D:326 , THR D:327 , MG D:356 , ALF D:357 , HOH D:361 , HOH D:362 , HOH D:365 , HOH D:366
BINDING SITE FOR RESIDUE GDP D 355
8
AC8
SOFTWARE
LYS A:271 , HIS A:322 , PHE A:323 , ASN A:331 , GLU D:275 , THR D:295 , TYR D:296 , GLU D:297 , HOH D:359
BINDING SITE FOR RESIDUE CIT D 358
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RGS (E:62-178,H:62-175)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RGS
PS50132
RGS domain profile.
RGS4_RAT
62-178
2
E:62-178
H:62-175
[
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Exons
(3, 6)
Info
All Exons
Exon 1.3 (E:51-71 | H:60-71)
Exon 1.4 (E:71-126 | H:71-126)
Exon 1.5 (E:127-178 | H:127-175)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000003774
1
ENSRNOE00000026170
chr13:
85540173-85540022
152
RGS4_RAT
1-15
15
0
-
-
1.2
ENSRNOT00000003774
2
ENSRNOE00000026215
chr13:
85537784-85537680
105
RGS4_RAT
15-50
36
0
-
-
1.3
ENSRNOT00000003774
3
ENSRNOE00000026289
chr13:
85537249-85537188
62
RGS4_RAT
50-71
22
2
E:51-71
H:60-71
21
12
1.4
ENSRNOT00000003774
4
ENSRNOE00000026356
chr13:
85536895-85536729
167
RGS4_RAT
71-126
56
2
E:71-126
H:71-126
56
56
1.5
ENSRNOT00000003774
5
ENSRNOE00000026404
chr13:
85536312-85533882
2431
RGS4_RAT
127-205
79
2
E:127-178
H:127-175
52
49
[
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SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1agre_ (E:)
1b: SCOP_d1agrh_ (H:)
2a: SCOP_d1agra1 (A:61-181)
2b: SCOP_d1agrd1 (D:61-181)
3a: SCOP_d1agra2 (A:5-60,A:182-354)
3b: SCOP_d1agrd2 (D:11-60,D:182-354)
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Protein Domains
(
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(
)
Organisms
(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Regulator of G-protein signaling, RGS
(52)
Superfamily
:
Regulator of G-protein signaling, RGS
(52)
Family
:
Regulator of G-protein signaling, RGS
(27)
Protein domain
:
Regulator of G-protein signaling 4, RGS4
(3)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d1agre_
E:
1b
d1agrh_
H:
Fold
:
Transducin (alpha subunit), insertion domain
(49)
Superfamily
:
Transducin (alpha subunit), insertion domain
(49)
Family
:
Transducin (alpha subunit), insertion domain
(49)
Protein domain
:
Transducin (alpha subunit), insertion domain
(49)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(19)
2a
d1agra1
A:61-181
2b
d1agrd1
D:61-181
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Transducin (alpha subunit)
(51)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(21)
3a
d1agra2
A:5-60,A:182-354
3b
d1agrd2
D:11-60,D:182-354
[
close SCOP info
]
CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1agrD01 (D:11-61,D:181-352)
1b: CATH_1agrA01 (A:8-61,A:181-352)
2a: CATH_1agrA02 (A:62-180)
2b: CATH_1agrD02 (D:62-180)
3a: CATH_1agrE01 (E:51-83,E:164-177)
3b: CATH_1agrH01 (H:60-83,H:164-175)
4a: CATH_1agrE02 (E:84-163)
4b: CATH_1agrH02 (H:84-163)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Norway rat (Rattus norvegicus)
(38)
1a
1agrD01
D:11-61,D:181-352
1b
1agrA01
A:8-61,A:181-352
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GI Alpha 1, domain 2-like
(67)
Homologous Superfamily
:
GI Alpha 1, domain 2-like
(66)
Norway rat (Rattus norvegicus)
(16)
2a
1agrA02
A:62-180
2b
1agrD02
D:62-180
Topology
:
Regulator of G-protein Signalling 4; domain 1
(15)
Homologous Superfamily
:
[code=1.10.196.10, no name defined]
(14)
Norway rat (Rattus norvegicus)
(3)
3a
1agrE01
E:51-83,E:164-177
3b
1agrH01
H:60-83,H:164-175
Topology
:
Regulator of G-protein Signalling 4; domain 2
(19)
Homologous Superfamily
:
Regulator of G-protein Signalling 4, domain 2
(19)
Norway rat (Rattus norvegicus)
(3)
4a
1agrE02
E:84-163
4b
1agrH02
H:84-163
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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