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1AFO
Asym. Unit
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Asym.Unit (507 KB)
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Models
(20 )
Title
:
DIMERIC TRANSMEMBRANE DOMAIN OF HUMAN GLYCOPHORIN A, NMR, 20 STRUCTURES
Authors
:
K. R. Mackenzie, J. H. Prestegard, D. M. Engelman
Date
:
11 Mar 97 (Deposition) - 17 Sep 97 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Keywords
:
Integral Membrane Protein, Human Glycophorin A, Transmembrane Helix Interactions, Membrane Protein Folding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. R. Mackenzie, J. H. Prestegard, D. M. Engelman
A Transmembrane Helix Dimer: Structure And Implications.
Science V. 276 131 1997
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_058923 (Q63K, chain A/B, )
2: VAR_058924 (A65P, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_058923
Q
82
K
GLPA_HUMAN
Polymorphism
---
A/B
Q
63
K
2
UniProt
VAR_058924
A
84
P
GLPA_HUMAN
Polymorphism
---
A/B
A
65
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GLYCOPHORIN_A (A:76-85,B:76-85)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOPHORIN_A
PS00312
Glycophorin A signature.
GLPA_HUMAN
95-104
2
A:76-85
B:76-85
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Exons
(3, 6)
Info
All Exons
Exon 1.5a (A:62-72 | B:62-72)
Exon 1.6a (A:72-100 | B:72-100)
Exon 1.7b (A:101-101 | B:101-101)
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All Exon Boundaries
1: Boundary 1.4a/1.5a
2: Boundary 1.5a/1.6a
3: Boundary 1.6a/1.7b
4: Boundary 1.7b/1.8f
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000360771
1a
ENSE00001721810
chr4:
145061904-145061752
153
GLPA_HUMAN
1-13
13
0
-
-
1.3
ENST00000360771
3
ENSE00001680915
chr4:
145041741-145041643
99
GLPA_HUMAN
13-46
34
0
-
-
1.4a
ENST00000360771
4a
ENSE00001139681
chr4:
145040934-145040839
96
GLPA_HUMAN
46-78
33
0
-
-
1.5a
ENST00000360771
5a
ENSE00001139707
chr4:
145039905-145039867
39
GLPA_HUMAN
78-91
14
2
A:62-72
B:62-72
11
11
1.6a
ENST00000360771
6a
ENSE00001139697
chr4:
145038092-145038007
86
GLPA_HUMAN
91-119
29
2
A:72-100
B:72-100
29
29
1.7b
ENST00000360771
7b
ENSE00001133833
chr4:
145035920-145035842
79
GLPA_HUMAN
120-146
27
2
A:101-101
B:101-101
1
1
1.8f
ENST00000360771
8f
ENSE00001200737
chr4:
145032563-145030457
2107
GLPA_HUMAN
146-150
5
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1afoa_ (A:)
1b: SCOP_d1afob_ (B:)
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Protein Domains
(
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(
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Organisms
(
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(
)
Class
:
Peptides
(792)
Fold
:
Transmembrane helical fragments
(68)
Superfamily
:
Transmembrane helical fragments
(68)
Family
:
Transmembrane helical fragments
(68)
Protein domain
:
Dimeric transmembrane domain of glycophorin A
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1afoa_
A:
1b
d1afob_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1afoA00 (A:62-101)
1b: CATH_1afoB00 (B:62-101)
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Organisms
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)
(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.70, no name defined]
(2)
Human (Homo sapiens)
(1)
1a
1afoA00
A:62-101
1b
1afoB00
B:62-101
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (507 KB)
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