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1AFC
Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (24 KB)
Biol.Unit 2 (24 KB)
Biol.Unit 3 (24 KB)
Biol.Unit 4 (24 KB)
Biol.Unit 5 (24 KB)
Biol.Unit 6 (24 KB)
Biol.Unit 7 (24 KB)
Biol.Unit 8 (24 KB)
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(1)
Title
:
STRUCTURAL STUDIES OF THE BINDING OF THE ANTI-ULCER DRUG SUCROSE OCTASULFATE TO ACIDIC FIBROBLAST GROWTH FACTOR
Authors
:
X. Zhu, B. T. Hsu, D. C. Rees
Date
:
13 Jul 93 (Deposition) - 31 Oct 93 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Growth Factor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhu, B. T. Hsu, D. C. Rees
Structural Studies Of The Binding Of The Anti-Ulcer Drug Sucrose Octasulfate To Acidic Fibroblast Growth Factor.
Structure V. 1 27 1993
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: SUCROSE OCTASULFATE (SCRa)
1b: SUCROSE OCTASULFATE (SCRb)
1c: SUCROSE OCTASULFATE (SCRc)
1d: SUCROSE OCTASULFATE (SCRd)
1e: SUCROSE OCTASULFATE (SCRe)
1f: SUCROSE OCTASULFATE (SCRf)
1g: SUCROSE OCTASULFATE (SCRg)
1h: SUCROSE OCTASULFATE (SCRh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SCR
8
Ligand/Ion
SUCROSE OCTASULFATE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:112 , LYS A:113 , ASN A:114 , ARG A:116 , LYS A:118 , ARG A:122 , HIS A:124 , GLN A:127
BINDING SITE FOR RESIDUE SCR A 141
2
AC2
SOFTWARE
LYS B:112 , LYS B:113 , ASN B:114 , ARG B:116 , LYS B:118 , ARG B:122 , GLN B:127 , PRO E:136
BINDING SITE FOR RESIDUE SCR B 141
3
AC3
SOFTWARE
ASN C:18 , LYS C:112 , LYS C:113 , LYS C:118 , ARG C:122 , GLN C:127 , PRO F:136
BINDING SITE FOR RESIDUE SCR C 141
4
AC4
SOFTWARE
ASN D:18 , LYS D:112 , LYS D:113 , ASN D:114 , ARG D:116 , LYS D:118 , ARG D:122 , PRO G:136
BINDING SITE FOR RESIDUE SCR D 141
5
AC5
SOFTWARE
LYS D:12 , PRO D:134 , PRO D:136 , ASN E:18 , LYS E:112 , LYS E:113 , ASN E:114 , LYS E:118 , ARG E:122 , GLN E:127
BINDING SITE FOR RESIDUE SCR E 141
6
AC6
SOFTWARE
HIS A:93 , LYS F:112 , LYS F:113 , ASN F:114 , ARG F:116 , LYS F:118 , ARG F:122 , GLN F:127
BINDING SITE FOR RESIDUE SCR F 141
7
AC7
SOFTWARE
LYS B:12 , LYS G:112 , LYS G:113 , ASN G:114 , ARG G:116 , LYS G:118 , ARG G:122 , GLN G:127
BINDING SITE FOR RESIDUE SCR G 141
8
AC8
SOFTWARE
LYS H:112 , LYS H:113 , ASN H:114 , LYS H:118 , ARG H:122 , GLN H:127
BINDING SITE FOR RESIDUE SCR H 141
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (A:71-94,B:71-94,C:71-94,D:71-94,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF1_BOVIN
86-109
8
A:71-94
B:71-94
C:71-94
D:71-94
E:71-94
F:71-94
G:71-94
H:71-94
[
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Exons
(3, 24)
Info
All Exons
Exon 1.3 (A:10-42 | B:10-42 | C:10-42 | D:10...)
Exon 1.4 (A:42-76 | B:42-76 | C:42-76 | D:42...)
Exon 1.5a (A:77-136 | B:77-136 | C:77-136 | D...)
View:
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All Exon Boundaries
1: Boundary 1.1/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5a
4: Boundary 1.5a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000043056
1
ENSBTAE00000317817
chr7:
53213331-53212944
388
FGF1_BOVIN
-
0
0
-
-
1.3
ENSBTAT00000043056
3
ENSBTAE00000054905
chr7:
53130074-53129872
203
FGF1_BOVIN
1-57
57
8
A:10-42
B:10-42
C:10-42
D:10-42
E:10-42
F:10-42
G:10-42
H:10-42
33
33
33
33
33
33
33
33
1.4
ENSBTAT00000043056
4
ENSBTAE00000054911
chr7:
53116494-53116391
104
FGF1_BOVIN
57-91
35
8
A:42-76
B:42-76
C:42-76
D:42-76
E:42-76
F:42-76
G:42-76
H:42-76
35
35
35
35
35
35
35
35
1.5a
ENSBTAT00000043056
5a
ENSBTAE00000317816
chr7:
53109571-53109317
255
FGF1_BOVIN
92-155
64
8
A:77-136
B:77-136
C:77-136
D:77-136
E:77-136
F:77-136
G:77-136
H:77-136
60
60
60
60
60
60
60
60
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1afca_ (A:)
1b: SCOP_d1afcb_ (B:)
1c: SCOP_d1afcc_ (C:)
1d: SCOP_d1afcd_ (D:)
1e: SCOP_d1afce_ (E:)
1f: SCOP_d1afcf_ (F:)
1g: SCOP_d1afcg_ (G:)
1h: SCOP_d1afch_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Acidic FGF (FGF1)
(88)
Cow (Bos taurus) [TaxId: 9913]
(2)
1a
d1afca_
A:
1b
d1afcb_
B:
1c
d1afcc_
C:
1d
d1afcd_
D:
1e
d1afce_
E:
1f
d1afcf_
F:
1g
d1afcg_
G:
1h
d1afch_
H:
[
close SCOP info
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1afcA00 (A:10-136)
1b: CATH_1afcB00 (B:10-136)
1c: CATH_1afcC00 (C:10-136)
1d: CATH_1afcD00 (D:10-136)
1e: CATH_1afcE00 (E:10-136)
1f: CATH_1afcF00 (F:10-136)
1g: CATH_1afcG00 (G:10-136)
1h: CATH_1afcH00 (H:10-136)
View:
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Cattle (Bos taurus)
(2)
1a
1afcA00
A:10-136
1b
1afcB00
B:10-136
1c
1afcC00
C:10-136
1d
1afcD00
D:10-136
1e
1afcE00
E:10-136
1f
1afcF00
F:10-136
1g
1afcG00
G:10-136
1h
1afcH00
H:10-136
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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