Entries with manually generated images from the JenaLib are marked in bold .
NAMES FOR PLAIN B-DNA'S
----------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
----------------------------------------------------------------------------
1S88 1S88 n.a. DNA duplex Y
1SP6 1SP6 n.a. 5'-D(*CP*CP*AP*CP*(HOL)P*GP*GP*AP*AP*C)- Y
3'/5'-D(GP*TP*TP*CP*CP*GP*GP*TP*GP*G)-3'
1SSJ 1SSJ n.a. 5'-D(*CP*CP*AP*CP*(HOB)P*GP*GP*AP*AP*C)- Y
3'/5'-D(GP*TP*TP*CP*CP*GP*GP*TP*GP*G)-3'
BD0001 423D n.a. 5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3' Y
BD0002 424D n.a. 5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3' Y
BD0003 425D n.a. 5'-D(*AP*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*T)-3' Y
BD0004 426D n.a. 5'-D(CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
BD0005 428D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
BD0007 436D n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-
3'
BD0012 460D n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-
3'
BD0013 461D n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-
3'
BD0015 1QC1 n.a. 5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3' Y
BD0023 1D8G n.a. 5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3' Y
BD0026 1DC0 n.a. 5'-D(*CP*AP*TP*GP*GP*GP*CP*CP*CP*AP*TP*G)-3' Y
BD0028 1DCV n.a. 5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3' Y
BD0029 1DOU n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
BD0030 1DPN n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-
3'
BD0033 1EN3 n.a. 5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3' Y
BD0034 1EN8 n.a. 5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3' Y
BD0035 1EN9 n.a. 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3' Y
BD0036 1ENE n.a. 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3' Y
BD0038 1EI4 n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*(TLC)P*(TLC)P*CP*GP*CP*
G)-3'
BD0039 1F69 n.a. 5'-D(*GP*GP*CP*GP*CP*C)-3' Y
BD0040 1F6C n.a. 5'-D(*GP*GP*CP*GP*CP*C)-3' Y
BD0041 1FQ2 n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
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NAMES FOR PLAIN B-DNA'S
----------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
----------------------------------------------------------------------------
BD0047 1HQ7 n.a. 5'-D(*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*C)-3' Y
BD0050 1IH1 n.a. 5'-D(*GP*GP*CP*GP*CP*C)-3' Y
BD0051 1IKK n.a. 5'-D(*CP*CP*TP*TP*TP*AP*AP*AP*GP*G)-3' Y
BD0052 1ILC n.a. 5'-D(*AP*CP*CP*GP*AP*AP*TP*TP*CP*GP*GP*T)-3' Y
BD0054 1JGR n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
BD0055 1D62 n.a. 5'-D(*CP*CP*AP*AP*IP*AP*TP*TP*GP*G)-3' Y
BD0057 1LP7 n.a. 5'-D(*CP*GP*CP*TP*TP*AP*TP*AP*TP*GP*CP*G)-3' Y
BD0059 1N4E n.a. 5'-D(*GP*CP*TP*TP*AP*AP*TP*TP*CP*G)-3' Y
BD0060 1N1O n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*(TFT)P*TP*CP*GP*CP*G)-
3'
BD0062 1NGT n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*(MTR)P*TP*CP*GP*CP*G)-
3'
BD0063 1P24 n.a. 5'-D(*GP*GP*CP*GP*CP*C)-3' Y
BD0064 1P25 n.a. 5'-D(*GP*GP*CP*GP*CP*C)-3' Y
BD0065 1P26 n.a. 5'-D(*GP*GP*CP*GP*CP*C)-3' Y
BD0066 1S23 n.a. 5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3' Y
BD0067 1S2R n.a. 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3' Y
BD0072 1VE8 n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*TP*TP*(5FC)P*GP*CP*G)-
3'
BDH071 250D n.a. 5'-D(*CP*GP*CP*TP*AP*GP*CP*G)-3' Y
BDJ017 1BD1 n.a. 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G)-3' Y
BDJ019 5DNB n.a. 5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3' Y
BDJ025 1D23 n.a. 5'-D(*CP*GP*AP*TP*CP*GP*AP*TP*CP*G)-3' Y
BDJ031 1D49 n.a. 5'-D(*CP*GP*AP*TP*TP*AP*AP*TP*CP*G)-3' Y
BDJ036 1D56 n.a. 5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*CP*G)-3', Y
CALCIUM
BDJ037 1D57 n.a. 5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*CP*G)-3', Y
MAGNESIUM
BDJ039 1CGC n.a. 5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3' Y
BDJ051 126D n.a. 5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3' Y
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NAMES FOR PLAIN B-DNA'S
----------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
----------------------------------------------------------------------------
BDJ052 158D n.a. 5'-D(*CP*CP*AP*AP*GP*CP*TP*TP*GP*G)-3', Y
CALCIUM
BDJ055 167D n.a. 5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3' Y
BDJ060 196D n.a. 5'-D(*CP*TP*CP*TP*CP*GP*AP*GP*AP*G)-3' Y
BDJ061 n.a. n.a. 5'-D(*CP*CP*AP*CP*TP*AP*GP*TP*GP*G)-3' Y
BDJ069 252D n.a. 5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3' Y
BDJ081 307D n.a. 5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' Y
BDL001 1BNA BEKSEP10 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', 290 K
BDL002 2BNA BEKSEP01 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', 16 K
BDL005 7BNA BEKSEP30 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', 290 K, USING ANISOTROPIC THERMAL MOTION
MODEL
BDL006 1D98 n.a. 5'-D(*CP*GP*CP*AP*AP*AP*AP*AP*AP*GP*CP*G)-3' Y
BDL007 1DN9 n.a. 5'-D(*CP*GP*CP*AP*TP*AP*TP*AP*TP*GP*CP*G)-3' Y
BDL015 1BDN n.a. 5'-D(*CP*GP*CP*AP*AP*AP*AP*AP*TP*GP*CP*G)-3' Y
BDL016 n.a. n.a. 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3' n.a.
BDL018 n.a. DODBAN 5'-D(*AP*CP*CP*GP*GP*CP*GP*CP*CP*AP*CP*A)- Y
3', 0 C
BDL020 9BNA n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', RE-REFINEMENT
BDL028 1D28 n.a. 5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3' Y
BDL029 1D29 n.a. 5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3' Y
BDL035 330D n.a. 5'-D(*AP*CP*CP*GP*CP*CP*GP*GP*CP*GP*CP*C)- Y
3',-15 C
BDL038 1D65 n.a. 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3' Y
BDL042 119D n.a. 5'-D(*CP*GP*TP*AP*GP*AP*TP*CP*TP*AP*CP*G)-3' Y
BDL047 1D89 n.a. 5'-D(*CP*GP*CP*GP*AP*AP*AP*AP*AP*AP*CP*G)-3' Y
BDL059 194D n.a. 5'-D(*CP*GP*CP*GP*TP*TP*AP*AP*CP*GP*CP*G)-3' Y
BDL070 249D n.a. 5'-D(*CP*GP*CP*TP*CP*TP*AP*GP*AP*GP*CP*G)-3' Y
BDL075 271D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3' Y
BDL078 287D n.a. 5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3' Y
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NAMES FOR PLAIN B-DNA'S
----------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
----------------------------------------------------------------------------
BDL084 355D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
DD0054 1NAB n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3' Y
DD0059 1QV4 n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
DD0060 1QV8 n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
UD0029 1P4Z n.a. 5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3' Y
UD0041 1QYL n.a. 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' Y
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Page 4 created by the NDB Project on Wed May 26 14:30:04 2004