Image LibraryNucleic Acid Database Archives

Entries with manually generated images from the JenaLib are marked in bold .


NAMES FOR PLAIN B-DNA'S

----------------------------------------------------------------------------

 NDB     PDB   CSD       Descriptor                                    Coord 

----------------------------------------------------------------------------

 1S88    1S88  n.a.      DNA duplex                                    Y    
 1SP6    1SP6  n.a.      5'-D(*CP*CP*AP*CP*(HOL)P*GP*GP*AP*AP*C)-      Y    
                         3'/5'-D(GP*TP*TP*CP*CP*GP*GP*TP*GP*G)-3'       
 1SSJ    1SSJ  n.a.      5'-D(*CP*CP*AP*CP*(HOB)P*GP*GP*AP*AP*C)-      Y    
                         3'/5'-D(GP*TP*TP*CP*CP*GP*GP*TP*GP*G)-3'       
 BD0001   423D  n.a.      5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3'  Y    
 BD0002   424D  n.a.      5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3'  Y    
 BD0003   425D  n.a.      5'-D(*AP*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*T)-3'  Y    
 BD0004   426D  n.a.      5'-D(CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'   Y    
 BD0005   428D  n.a.      5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'  Y    
 BD0007   436D  n.a.      5'-                                           Y    
                         D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-       
                         3'       
 BD0012   460D  n.a.      5'-                                           Y    
                         D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-       
                         3'       
 BD0013   461D  n.a.      5'-                                           Y    
                         D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-       
                         3'       
 BD0015   1QC1  n.a.      5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3'        Y    
 BD0023   1D8G  n.a.      5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3'        Y    
 BD0026   1DC0  n.a.      5'-D(*CP*AP*TP*GP*GP*GP*CP*CP*CP*AP*TP*G)-3'  Y    
 BD0028   1DCV  n.a.      5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3'        Y    
 BD0029   1DOU  n.a.      5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'  Y    
 BD0030   1DPN  n.a.      5'-                                           Y    
                         D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-       
                         3'       
 BD0033   1EN3  n.a.      5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'        Y    
 BD0034   1EN8  n.a.      5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'        Y    
 BD0035   1EN9  n.a.      5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'        Y    
 BD0036   1ENE  n.a.      5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'        Y    
 BD0038   1EI4  n.a.      5'-                                           Y    
                         D(*CP*GP*CP*GP*AP*AP*(TLC)P*(TLC)P*CP*GP*CP*       
                         G)-3'       
 BD0039   1F69  n.a.      5'-D(*GP*GP*CP*GP*CP*C)-3'                    Y    
 BD0040   1F6C  n.a.      5'-D(*GP*GP*CP*GP*CP*C)-3'                    Y    
 BD0041   1FQ2  n.a.      5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'  Y    
----------------------------------------------------------------------------

Page 1 created by the NDB Project on Wed May 26 14:30:04 2004



NAMES FOR PLAIN B-DNA'S

----------------------------------------------------------------------------

 NDB     PDB   CSD       Descriptor                                    Coord 

----------------------------------------------------------------------------

 BD0047   1HQ7  n.a.      5'-D(*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*C)-3'  Y    
 BD0050   1IH1  n.a.      5'-D(*GP*GP*CP*GP*CP*C)-3'                    Y    
 BD0051   1IKK  n.a.      5'-D(*CP*CP*TP*TP*TP*AP*AP*AP*GP*G)-3'        Y    
 BD0052   1ILC  n.a.      5'-D(*AP*CP*CP*GP*AP*AP*TP*TP*CP*GP*GP*T)-3'  Y    
 BD0054   1JGR  n.a.      5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'  Y    
 BD0055   1D62  n.a.      5'-D(*CP*CP*AP*AP*IP*AP*TP*TP*GP*G)-3'        Y    
 BD0057   1LP7  n.a.      5'-D(*CP*GP*CP*TP*TP*AP*TP*AP*TP*GP*CP*G)-3'  Y    
 BD0059   1N4E  n.a.      5'-D(*GP*CP*TP*TP*AP*AP*TP*TP*CP*G)-3'        Y    
 BD0060   1N1O  n.a.      5'-                                           Y    
                         D(*CP*GP*CP*GP*AP*AP*(TFT)P*TP*CP*GP*CP*G)-       
                         3'       
 BD0062   1NGT  n.a.      5'-                                           Y    
                         D(*CP*GP*CP*GP*AP*AP*(MTR)P*TP*CP*GP*CP*G)-       
                         3'       
 BD0063   1P24  n.a.      5'-D(*GP*GP*CP*GP*CP*C)-3'                    Y    
 BD0064   1P25  n.a.      5'-D(*GP*GP*CP*GP*CP*C)-3'                    Y    
 BD0065   1P26  n.a.      5'-D(*GP*GP*CP*GP*CP*C)-3'                    Y    
 BD0066   1S23  n.a.      5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3'        Y    
 BD0067   1S2R  n.a.      5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3'  Y    
 BD0072   1VE8  n.a.      5'-                                           Y    
                         D(*CP*GP*CP*GP*AP*AP*TP*TP*(5FC)P*GP*CP*G)-       
                         3'       
 BDH071   250D  n.a.      5'-D(*CP*GP*CP*TP*AP*GP*CP*G)-3'              Y    
 BDJ017   1BD1  n.a.      5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G)-3'        Y    
 BDJ019   5DNB  n.a.      5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'        Y    
 BDJ025   1D23  n.a.      5'-D(*CP*GP*AP*TP*CP*GP*AP*TP*CP*G)-3'        Y    
 BDJ031   1D49  n.a.      5'-D(*CP*GP*AP*TP*TP*AP*AP*TP*CP*G)-3'        Y    
 BDJ036   1D56  n.a.      5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*CP*G)-3',       Y    
                         CALCIUM       
 BDJ037   1D57  n.a.      5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*CP*G)-3',       Y    
                         MAGNESIUM       
 BDJ039   1CGC  n.a.      5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3'        Y    
 BDJ051   126D  n.a.      5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3'        Y    
----------------------------------------------------------------------------

Page 2 created by the NDB Project on Wed May 26 14:30:04 2004



NAMES FOR PLAIN B-DNA'S

----------------------------------------------------------------------------

 NDB     PDB   CSD       Descriptor                                    Coord 

----------------------------------------------------------------------------

 BDJ052   158D  n.a.      5'-D(*CP*CP*AP*AP*GP*CP*TP*TP*GP*G)-3',       Y    
                         CALCIUM       
 BDJ055   167D  n.a.      5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3'        Y    
 BDJ060   196D  n.a.      5'-D(*CP*TP*CP*TP*CP*GP*AP*GP*AP*G)-3'        Y    
 BDJ061   n.a.  n.a.      5'-D(*CP*CP*AP*CP*TP*AP*GP*TP*GP*G)-3'        Y    
 BDJ069   252D  n.a.      5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3'        Y    
 BDJ081   307D  n.a.      5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'        Y    
 BDL001   1BNA  BEKSEP10  5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-    Y    
                         3', 290 K       
 BDL002   2BNA  BEKSEP01  5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-    Y    
                         3', 16 K       
 BDL005   7BNA  BEKSEP30  5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-    Y    
                         3', 290 K, USING ANISOTROPIC THERMAL MOTION        
                         MODEL       
 BDL006   1D98  n.a.      5'-D(*CP*GP*CP*AP*AP*AP*AP*AP*AP*GP*CP*G)-3'  Y    
 BDL007   1DN9  n.a.      5'-D(*CP*GP*CP*AP*TP*AP*TP*AP*TP*GP*CP*G)-3'  Y    
 BDL015   1BDN  n.a.      5'-D(*CP*GP*CP*AP*AP*AP*AP*AP*TP*GP*CP*G)-3'  Y    
 BDL016   n.a.  n.a.      5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3'  n.a. 
 BDL018   n.a.  DODBAN    5'-D(*AP*CP*CP*GP*GP*CP*GP*CP*CP*AP*CP*A)-    Y    
                         3', 0 C       
 BDL020   9BNA  n.a.      5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-    Y    
                         3', RE-REFINEMENT       
 BDL028   1D28  n.a.      5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3'  Y    
 BDL029   1D29  n.a.      5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3'  Y    
 BDL035   330D  n.a.      5'-D(*AP*CP*CP*GP*CP*CP*GP*GP*CP*GP*CP*C)-    Y    
                         3',-15 C       
 BDL038   1D65  n.a.      5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3'  Y    
 BDL042   119D  n.a.      5'-D(*CP*GP*TP*AP*GP*AP*TP*CP*TP*AP*CP*G)-3'  Y    
 BDL047   1D89  n.a.      5'-D(*CP*GP*CP*GP*AP*AP*AP*AP*AP*AP*CP*G)-3'  Y    
 BDL059   194D  n.a.      5'-D(*CP*GP*CP*GP*TP*TP*AP*AP*CP*GP*CP*G)-3'  Y    
 BDL070   249D  n.a.      5'-D(*CP*GP*CP*TP*CP*TP*AP*GP*AP*GP*CP*G)-3'  Y    
 BDL075   271D  n.a.      5'-D(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3'  Y    
 BDL078   287D  n.a.      5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3'  Y    
----------------------------------------------------------------------------

Page 3 created by the NDB Project on Wed May 26 14:30:04 2004



NAMES FOR PLAIN B-DNA'S

----------------------------------------------------------------------------

 NDB     PDB   CSD       Descriptor                                    Coord 

----------------------------------------------------------------------------

 BDL084   355D  n.a.      5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'  Y    
 DD0054   1NAB  n.a.      5'-D(*CP*GP*AP*TP*CP*G)-3'                    Y    
 DD0059   1QV4  n.a.      5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'  Y    
 DD0060   1QV8  n.a.      5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'  Y    
 UD0029   1P4Z  n.a.      5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3'        Y    
 UD0041   1QYL  n.a.      5'-D(*GP*CP*AP*TP*GP*CP*T)-3'                 Y    
----------------------------------------------------------------------------

Page 4 created by the NDB Project on Wed May 26 14:30:04 2004