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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF THE B-DNA DODECAMER CGCGAATTCGCG WITH THALLIUM IONS.
 
Authors :  S. B. Howerton, C. C. Sines, D. Vanderveer, L. D. Williams
Date :  26 Jun 01  (Deposition) - 05 Sep 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Double Helix, Deoxyribonucleic Acid, Thallium, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. B. Howerton, C. C. Sines, D. Vanderveer, L. D. Williams
Locating Monovalent Cations In The Grooves Of B-Dna.
Biochemistry V. 40 10023 2001
PubMed-ID: 11513580  |  Reference-DOI: 10.1021/BI010391+
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'
    ChainsA, B
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric/Biological Unit (2, 14)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2TL13Ligand/IonTHALLIUM (I) ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETL A:2108 , HOH A:3136 , HOH A:3137 , HOH A:3138 , HOH A:3139 , TL B:2107 , HOH B:3135 , HOH B:3140BINDING SITE FOR RESIDUE MG A 2013
02AC2SOFTWAREDC B:2003 , DG B:2004 , HOH B:3081 , HOH B:3082BINDING SITE FOR RESIDUE TL B 2101
03AC3SOFTWAREDG A:1010 , TL A:2110 , TL A:2113 , DG B:2002BINDING SITE FOR RESIDUE TL B 2102
04AC4SOFTWAREDG A:1004 , HOH A:3122 , HOH A:3123BINDING SITE FOR RESIDUE TL A 2103
05AC5SOFTWAREDA A:1005 , DA A:1006 , DC B:2009 , HOH B:3003BINDING SITE FOR RESIDUE TL A 2104
06AC6SOFTWAREDG A:1004 , DA A:1005 , DG A:1012 , HOH A:3120BINDING SITE FOR RESIDUE TL A 2105
07AC7SOFTWAREDT A:1007 , DT A:1008 , HOH A:3015 , DT B:2007 , DT B:2008 , HOH B:3024BINDING SITE FOR RESIDUE TL B 2106
08AC8SOFTWAREDG A:1002 , MG A:2013 , TL A:2108 , HOH A:3136 , DG B:2010 , HOH B:3135BINDING SITE FOR RESIDUE TL B 2107
09AC9SOFTWAREDC A:1001 , DG A:1002 , MG A:2013 , HOH A:3136 , HOH A:3139 , DG B:2010 , TL B:2107 , HOH B:3135BINDING SITE FOR RESIDUE TL A 2108
10BC1SOFTWAREDG A:1004 , DC B:2009 , DG B:2010 , HOH B:3003 , HOH B:3103BINDING SITE FOR RESIDUE TL B 2109
11BC2SOFTWAREDG A:1010 , TL A:2113 , HOH A:3115 , HOH A:3116 , TL B:2102BINDING SITE FOR RESIDUE TL A 2110
12BC3SOFTWAREDC A:1001 , HOH A:3013 , HOH A:3079 , DG B:2002 , DC B:2003BINDING SITE FOR RESIDUE TL A 2111
13BC4SOFTWAREDG A:1002 , DC A:1003 , DC B:2001 , HOH B:3124BINDING SITE FOR RESIDUE TL B 2112
14BC5SOFTWAREDG A:1010 , TL A:2110 , DG B:2002 , TL B:2102BINDING SITE FOR RESIDUE TL A 2113

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JGR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JGR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JGR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JGR)

(-) Exons   (0, 0)

(no "Exon" information available for 1JGR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                             
                1jgr A 1001 CGCGAATTCGCG 1012
                                  1010  

Chain B from PDB  Type:DNA  Length:12
                                             
                1jgr B 2001 CGCGAATTCGCG 2012
                                  2010  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1JGR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1JGR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1JGR)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1JGR)

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