Entries with manually generated images from the JenaLib are marked in bold .
NAMES FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES ------------------------------------------------------------------------- NDB PDB CSD Descriptor Coord ------------------------------------------------------------------------- 1ROQ 1ROQ n.a. 5'- Y R(*GP*GP*UP*AP*UP*CP*AP*CP*GP*GP*UP*AP*CP*C) -3' AR0005 413D n.a. 5'- Y R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3' AR0007 422D n.a. 5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3' Y AR0023 1CSL n.a. 5'- Y R(*AP*AP*CP*GP*GP*GP*CP*GP*CP*AP*GP*AP*A)- 3', 5'- R(*UP*CP*UP*GP*AP*CP*GP*GP*UP*AP*CP*GP*UP*UP *U)-3' AR0024 1D4R n.a. 29-MER FRAGMENT OF SRP RNA HELIX 6 Y AR0026 1DQF n.a. 5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3', 5'- Y R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3' AR0027 1DQH n.a. 5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3', 5'- Y R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3' AR0028 1DUQ n.a. REV BINDING ELEMENT Y AR0029 1FUF n.a. (5'- Y R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(BRO) CP*C)-3') AR0032 1I9X n.a. BPS-U2 SNRNA DUPLEX Y AR0033 1IK5 n.a. 5'- Y R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(BRO) CP*C)-3' AR0034 1J9H n.a. 5'-R(*GP*UP*GP*UP*CP*GP*(BRO)CP*AP*C)-3' Y AR0035 1JZV n.a. 5'-R(*GP*GP*CP*GP*AP*CP*(5BU)P*G)-3' Y AR0039 1KFO n.a. 5'- Y R(*GP*AP*AP*UP*GP*CP*CP*UP*GP*CP*GP*AP*GP*CP *AP*(BRO)UP*CP*CP*C)-3' AR0041 1LNT n.a. 5'- Y R(*GP*CP*GP*UP*CP*AP*GP*GP*UP*CP*(CB2)CP*G)- 3' AR0042 1M28 n.a. HIV-1(LAI) RNA Y AR0043 1M29 n.a. HIV-1(LAI) RNA Y AR0044 1NLC n.a. 5'- Y R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP *CP*AP*CP*AP*GP*CP*AP*AP*G)-3' AR0045 1NLE n.a. 5'- Y R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP *CP*AP*CP*AP*GP*CP*AP*AP*G)-3' AR0046 1O3Z n.a. HIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKED Y ARHB90 333D n.a. 5'-R(*CP*GP*CP*AP*IP*GP*CP*G)-3' Y ARM0107 373D n.a. 5'- Y R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3' DR0009 1NTA n.a. 5'- Y R(*GP*GP*AP*UP*CP*GP*CP*AP*UP*UP*UP*GP*GP*AP *CP*UP*UP*CP*UP*GP*CP*C)-3', Streptomycin DR0010 1NTB n.a. 5'- Y R(*GP*GP*AP*UP*CP*GP*CP*AP*UP*UP*UP*GP*GP*AP *CP*UP*UP*CP*UP*GP*CP*C)-3', Streptomycin UR0001 429D n.a. 5'- Y R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)- 3', 5'-R(*GP*CP*UP*GP*GP*GP*AP*GP*UP*CP*C)- 3' ------------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:30:16 2004 NAMES FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES ------------------------------------------------------------------------- NDB PDB CSD Descriptor Coord ------------------------------------------------------------------------- UR0005 462D n.a. 5'- Y R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP *CP*AP*CP*AP*GP*CP*AP*AP*G)-3' UR0009 1DUH n.a. 4.5S RNA DOMAIN IV Y UR0025 1MHK n.a. RNA BCh12, Short and Long strands Y UR0028 1NUJ n.a. 5'- Y R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3' UR0029 1NYI n.a. Hammerhead Ribozyme Y UR0030 1NUV n.a. 5'- Y R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3' UR0032 1Q29 n.a. 5'- Y R(*GP*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP *GP*CP*C)-3'/Ribozyme URF042 1OSU n.a. 5'-R(*UP*UP*CP*GP*CP*G)-3' Y URL029 205D n.a. 5'-R(*GP*GP*AP*CP*UP*UP*UP*GP*GP*UP*CP*C)-3' Y URL050 280D n.a. 5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3' Y URL051 283D n.a. 5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*C)- Y 3', MN 2+ URL064 354D n.a. 5'-R(*CP*CP*GP*AP*UP*GP*GP*UP*AP*GP*UP*G)- Y 3', LOOP E FROM 5S RRNA URL065 356D n.a. FRAGMENT I FROM 5S RRNA Y URL066 357D n.a. FRAGMENT I FROM 5S RRNA Y URL069 364D n.a. FRAGMENT I FROM 5S RRNA Y URX075 397D n.a. 5'- Y R(*GP*GP*CP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP *G)-3' ------------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:30:16 2004