Image LibraryNucleic Acid Database Archives

Entries with manually generated images from the JenaLib are marked in bold .


NAMES FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES

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 NDB      PDB   CSD   Descriptor                                    Coord 

-------------------------------------------------------------------------

 1ROQ     1ROQ  n.a.  5'-                                           Y    
                      R(*GP*GP*UP*AP*UP*CP*AP*CP*GP*GP*UP*AP*CP*C)       
                      -3'       
 AR0005    413D  n.a.  5'-                                           Y    
                      R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3'       
 AR0007    422D  n.a.  5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3'  Y    
 AR0023    1CSL  n.a.  5'-                                           Y    
                      R(*AP*AP*CP*GP*GP*GP*CP*GP*CP*AP*GP*AP*A)-       
                      3', 5'-       
                      R(*UP*CP*UP*GP*AP*CP*GP*GP*UP*AP*CP*GP*UP*UP       
                      *U)-3'       
 AR0024    1D4R  n.a.  29-MER FRAGMENT OF SRP RNA HELIX 6            Y    
 AR0026    1DQF  n.a.  5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3', 5'-      Y    
                      R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3'       
 AR0027    1DQH  n.a.  5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3', 5'-      Y    
                      R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3'       
 AR0028    1DUQ  n.a.  REV BINDING ELEMENT                           Y    
 AR0029    1FUF  n.a.  (5'-                                          Y    
                      R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(BRO)       
                      CP*C)-3')       
 AR0032    1I9X  n.a.  BPS-U2 SNRNA DUPLEX                           Y    
 AR0033    1IK5  n.a.  5'-                                           Y    
                      R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(BRO)       
                      CP*C)-3'       
 AR0034    1J9H  n.a.  5'-R(*GP*UP*GP*UP*CP*GP*(BRO)CP*AP*C)-3'      Y    
 AR0035    1JZV  n.a.  5'-R(*GP*GP*CP*GP*AP*CP*(5BU)P*G)-3'          Y    
 AR0039    1KFO  n.a.  5'-                                           Y    
                      R(*GP*AP*AP*UP*GP*CP*CP*UP*GP*CP*GP*AP*GP*CP       
                      *AP*(BRO)UP*CP*CP*C)-3'       
 AR0041    1LNT  n.a.  5'-                                           Y    
                      R(*GP*CP*GP*UP*CP*AP*GP*GP*UP*CP*(CB2)CP*G)-       
                      3'       
 AR0042    1M28  n.a.  HIV-1(LAI) RNA                                Y    
 AR0043    1M29  n.a.  HIV-1(LAI) RNA                                Y    
 AR0044    1NLC  n.a.  5'-                                           Y    
                      R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP       
                      *CP*AP*CP*AP*GP*CP*AP*AP*G)-3'       
 AR0045    1NLE  n.a.  5'-                                           Y    
                      R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP       
                      *CP*AP*CP*AP*GP*CP*AP*AP*G)-3'       
 AR0046    1O3Z  n.a.  HIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKED      Y    
 ARHB90    333D  n.a.  5'-R(*CP*GP*CP*AP*IP*GP*CP*G)-3'              Y    
 ARM0107   373D  n.a.  5'-                                           Y    
                      R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3'       
 DR0009    1NTA  n.a.  5'-                                           Y    
                      R(*GP*GP*AP*UP*CP*GP*CP*AP*UP*UP*UP*GP*GP*AP       
                      *CP*UP*UP*CP*UP*GP*CP*C)-3', Streptomycin       
 DR0010    1NTB  n.a.  5'-                                           Y    
                      R(*GP*GP*AP*UP*CP*GP*CP*AP*UP*UP*UP*GP*GP*AP       
                      *CP*UP*UP*CP*UP*GP*CP*C)-3', Streptomycin       
 UR0001    429D  n.a.  5'-                                           Y    
                      R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-       
                      3', 5'-R(*GP*CP*UP*GP*GP*GP*AP*GP*UP*CP*C)-       
                      3'       
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Page 1 created by the NDB Project on Wed May 26 14:30:16 2004



NAMES FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES

-------------------------------------------------------------------------

 NDB      PDB   CSD   Descriptor                                    Coord 

-------------------------------------------------------------------------

 UR0005    462D  n.a.  5'-                                           Y    
                      R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP       
                      *CP*AP*CP*AP*GP*CP*AP*AP*G)-3'       
 UR0009    1DUH  n.a.  4.5S RNA DOMAIN IV                            Y    
 UR0025    1MHK  n.a.  RNA BCh12, Short and Long strands             Y    
 UR0028    1NUJ  n.a.  5'-                                           Y    
                      R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3'       
 UR0029    1NYI  n.a.  Hammerhead Ribozyme                           Y    
 UR0030    1NUV  n.a.  5'-                                           Y    
                      R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3'       
 UR0032    1Q29  n.a.  5'-                                           Y    
                      R(*GP*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP       
                      *GP*CP*C)-3'/Ribozyme       
 URF042    1OSU  n.a.  5'-R(*UP*UP*CP*GP*CP*G)-3'                    Y    
 URL029    205D  n.a.  5'-R(*GP*GP*AP*CP*UP*UP*UP*GP*GP*UP*CP*C)-3'  Y    
 URL050    280D  n.a.  5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3'  Y    
 URL051    283D  n.a.  5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*C)-    Y    
                      3', MN 2+       
 URL064    354D  n.a.  5'-R(*CP*CP*GP*AP*UP*GP*GP*UP*AP*GP*UP*G)-    Y    
                      3', LOOP E FROM 5S RRNA       
 URL065    356D  n.a.  FRAGMENT I FROM 5S RRNA                       Y    
 URL066    357D  n.a.  FRAGMENT I FROM 5S RRNA                       Y    
 URL069    364D  n.a.  FRAGMENT I FROM 5S RRNA                       Y    
 URX075    397D  n.a.  5'-                                           Y    
                      R(*GP*GP*CP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP       
                      *G)-3'       
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Page 2 created by the NDB Project on Wed May 26 14:30:16 2004