Entries with manually generated images from the JenaLib are marked in bold .
NAMES FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES
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NDB PDB CSD Descriptor Coord
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1ROQ 1ROQ n.a. 5'- Y
R(*GP*GP*UP*AP*UP*CP*AP*CP*GP*GP*UP*AP*CP*C)
-3'
AR0005 413D n.a. 5'- Y
R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3'
AR0007 422D n.a. 5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3' Y
AR0023 1CSL n.a. 5'- Y
R(*AP*AP*CP*GP*GP*GP*CP*GP*CP*AP*GP*AP*A)-
3', 5'-
R(*UP*CP*UP*GP*AP*CP*GP*GP*UP*AP*CP*GP*UP*UP
*U)-3'
AR0024 1D4R n.a. 29-MER FRAGMENT OF SRP RNA HELIX 6 Y
AR0026 1DQF n.a. 5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3', 5'- Y
R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3'
AR0027 1DQH n.a. 5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3', 5'- Y
R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3'
AR0028 1DUQ n.a. REV BINDING ELEMENT Y
AR0029 1FUF n.a. (5'- Y
R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(BRO)
CP*C)-3')
AR0032 1I9X n.a. BPS-U2 SNRNA DUPLEX Y
AR0033 1IK5 n.a. 5'- Y
R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(BRO)
CP*C)-3'
AR0034 1J9H n.a. 5'-R(*GP*UP*GP*UP*CP*GP*(BRO)CP*AP*C)-3' Y
AR0035 1JZV n.a. 5'-R(*GP*GP*CP*GP*AP*CP*(5BU)P*G)-3' Y
AR0039 1KFO n.a. 5'- Y
R(*GP*AP*AP*UP*GP*CP*CP*UP*GP*CP*GP*AP*GP*CP
*AP*(BRO)UP*CP*CP*C)-3'
AR0041 1LNT n.a. 5'- Y
R(*GP*CP*GP*UP*CP*AP*GP*GP*UP*CP*(CB2)CP*G)-
3'
AR0042 1M28 n.a. HIV-1(LAI) RNA Y
AR0043 1M29 n.a. HIV-1(LAI) RNA Y
AR0044 1NLC n.a. 5'- Y
R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP
*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'
AR0045 1NLE n.a. 5'- Y
R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP
*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'
AR0046 1O3Z n.a. HIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKED Y
ARHB90 333D n.a. 5'-R(*CP*GP*CP*AP*IP*GP*CP*G)-3' Y
ARM0107 373D n.a. 5'- Y
R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3'
DR0009 1NTA n.a. 5'- Y
R(*GP*GP*AP*UP*CP*GP*CP*AP*UP*UP*UP*GP*GP*AP
*CP*UP*UP*CP*UP*GP*CP*C)-3', Streptomycin
DR0010 1NTB n.a. 5'- Y
R(*GP*GP*AP*UP*CP*GP*CP*AP*UP*UP*UP*GP*GP*AP
*CP*UP*UP*CP*UP*GP*CP*C)-3', Streptomycin
UR0001 429D n.a. 5'- Y
R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-
3', 5'-R(*GP*CP*UP*GP*GP*GP*AP*GP*UP*CP*C)-
3'
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Page 1 created by the NDB Project on Wed May 26 14:30:16 2004
NAMES FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES
-------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
-------------------------------------------------------------------------
UR0005 462D n.a. 5'- Y
R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP
*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'
UR0009 1DUH n.a. 4.5S RNA DOMAIN IV Y
UR0025 1MHK n.a. RNA BCh12, Short and Long strands Y
UR0028 1NUJ n.a. 5'- Y
R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3'
UR0029 1NYI n.a. Hammerhead Ribozyme Y
UR0030 1NUV n.a. 5'- Y
R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3'
UR0032 1Q29 n.a. 5'- Y
R(*GP*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP
*GP*CP*C)-3'/Ribozyme
URF042 1OSU n.a. 5'-R(*UP*UP*CP*GP*CP*G)-3' Y
URL029 205D n.a. 5'-R(*GP*GP*AP*CP*UP*UP*UP*GP*GP*UP*CP*C)-3' Y
URL050 280D n.a. 5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3' Y
URL051 283D n.a. 5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*C)- Y
3', MN 2+
URL064 354D n.a. 5'-R(*CP*CP*GP*AP*UP*GP*GP*UP*AP*GP*UP*G)- Y
3', LOOP E FROM 5S RRNA
URL065 356D n.a. FRAGMENT I FROM 5S RRNA Y
URL066 357D n.a. FRAGMENT I FROM 5S RRNA Y
URL069 364D n.a. FRAGMENT I FROM 5S RRNA Y
URX075 397D n.a. 5'- Y
R(*GP*GP*CP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP
*G)-3'
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Page 2 created by the NDB Project on Wed May 26 14:30:16 2004