SCOP 2.04 - JenaLib Tree Browser

Compact view: follow the link behind a name to look at the corresponding complete branch (Full view)

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: All alpha proteins (14657)

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Fold: A DNA-binding domain in eukaryotic transcription factors (2)

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Superfamily: A DNA-binding domain in eukaryotic transcription factors (2)

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Family: A DNA-binding domain in eukaryotic transcription factors (2)

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Fold: ATP-dependent DNA ligase DNA-binding domain (1)

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Superfamily: ATP-dependent DNA ligase DNA-binding domain (1)

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Family: ATP-dependent DNA ligase DNA-binding domain (1)

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Fold: DNA/RNA-binding 3-helical bundle (1299)

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Superfamily: ARID-like (14)

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Family: ARID domain (12)

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Protein domain: DNA-binding domain from the dead ringer protein (2)

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Protein domain: MRF-2 DNA-binding domain (2)

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Superfamily: Homeodomain-like (373)

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Family: Centromere-binding (3)

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Protein domain: DNA-binding domain of centromere binding protein B (CENP-B) (2)

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Family: DNA-binding domain of rap1 (2)

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Protein domain: DNA-binding domain of rap1 (1)

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Family: DNA-binding domain of telomeric protein (9)

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Protein domain: DNA-binding domain of human telomeric protein, hTRF1 (4)

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Family: FIS-like (34)

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Protein domain: DNA-binding domain of NTRC (1)

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Protein domain: Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain (1)

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Family: Homeodomain (93)

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Protein domain: DNA-binding protein SATB2 (1)

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Family: Myb/SANT domain (34)

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Protein domain: b-Myb DNA binding domain (1)

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Protein domain: c-Myb, DNA-binding domain (16)

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Family: Recombinase DNA-binding domain (20)

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Protein domain: HIN recombinase (DNA-binding domain) (8)

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Protein domain: Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase (2)

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Superfamily: KorB DNA-binding domain-like (2)

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Family: KorB DNA-binding domain-like (2)

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Protein domain: Transcriptional repressor protein KorB DNA-binding domain (1)

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Superfamily: Winged helix DNA-binding domain (576)

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Family: Archaeal DNA-binding protein (2)

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Family: Arginine repressor (ArgR), N-terminal DNA-binding domain (5)

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Protein domain: Arginine repressor (ArgR), N-terminal DNA-binding domain (5)

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Family: DNA-binding domain from rap30 (2)

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Protein domain: DNA-binding domain from rap30 (2)

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Family: DNA-binding protein Mj223 (1)

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Protein domain: DNA-binding protein Mj223 (1)

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Family: Forkhead DNA-binding domain (17)

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Family: Helicase DNA-binding domain (13)

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Family: LexA repressor, N-terminal DNA-binding domain (4)

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Protein domain: LexA repressor, N-terminal DNA-binding domain (4)

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Family: RecQ helicase DNA-binding domain-like (4)

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Protein domain: DNA helicase RecQ DNA-binding domain (2)

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Family: ReutB4095-like (1)

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Protein domain: Putative DNA-binding protein ReutB4095 (1)

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Family: Z-DNA binding domain (15)

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Fold: Domain of early E2A DNA-binding protein, ADDBP (4)

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Superfamily: Domain of early E2A DNA-binding protein, ADDBP (4)

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Family: Domain of early E2A DNA-binding protein, ADDBP (4)

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Protein domain: Domain of early E2A DNA-binding protein, ADDBP (4)

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Fold: HLH-like (13)

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Superfamily: HLH, helix-loop-helix DNA-binding domain (12)

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Family: HLH, helix-loop-helix DNA-binding domain (12)

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Fold: IHF-like DNA-binding proteins (28)

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Superfamily: IHF-like DNA-binding proteins (28)

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Family: DNA-binding domain (fragment?) of the TraM protein (1)

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Protein domain: DNA-binding domain (fragment?) of the TraM protein (1)

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Fold: lambda repressor-like DNA-binding domains (180)

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Superfamily: lambda repressor-like DNA-binding domains (180)

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Family: CUT domain (10)

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Protein domain: DNA-binding protein SATB1 (1)

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Protein domain: DNA-binding protein SATB2 (2)

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Family: Phage repressors (36)

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Protein domain: 434 C1 repressor, DNA-binding domain (8)

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Protein domain: lambda C1 repressor, DNA-binding domain (5)

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Protein domain: P22 C2 repressor, DNA-binding domain (5)

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Family: SinR domain-like (36)

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Protein domain: SinR repressor, DNA-binding domain (1)

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Fold: LEM/SAP HeH motif (33)

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Superfamily: DNA-binding domain of EIN3-like (1)

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Family: DNA-binding domain of EIN3-like (1)

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Superfamily: SAP domain (9)

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Family: SAP domain (9)

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Protein domain: DNA binding C-terminal domain of ku70 (2)

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Protein domain: S/mar DNA-binding protein Tho1 (1)

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Fold: Putative DNA-binding domain (45)

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Superfamily: Putative DNA-binding domain (45)

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Family: DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain (2)

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Protein domain: DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain (2)

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Family: DNA-binding N-terminal domain of transcription activators (16)

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Family: Excisionase-like (9)

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Protein domain: mu transposase, DNA-binding domain (4)

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Fold: RuvA C-terminal domain-like (106)

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Superfamily: Double-stranded DNA-binding domain (2)

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Family: Double-stranded DNA-binding domain (2)

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Fold: SAM domain-like (639)

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Superfamily: SAM/Pointed domain (61)

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Family: Pointed domain (12)

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Protein domain: Ets DNA-binding protein pokkuri (Yan) (2)

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Fold: Skp1 dimerisation domain-like (18)

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Superfamily: Skp1 dimerisation domain-like (18)

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Family: Skp1 dimerisation domain-like (13)

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Protein domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D (2)

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Class: All beta proteins (24004)

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Fold: beta-Trefoil (385)

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Superfamily: DNA-binding protein LAG-1 (CSL) (5)

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Family: DNA-binding protein LAG-1 (CSL) (4)

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Protein domain: DNA-binding protein LAG-1 (CSL) (4)

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Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f (364)

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Superfamily: p53-like transcription factors (153)

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Family: DNA-binding domain from NDT80 (14)

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Protein domain: DNA-binding domain from NDT80 (14)

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Family: DNA-binding protein LAG-1 (CSL) (4)

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Protein domain: DNA-binding protein LAG-1 (CSL) (4)

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Family: p53 DNA-binding domain-like (80)

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Protein domain: p53 tumor suppressor, DNA-binding domain (33)

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Family: Rel/Dorsal transcription factors, DNA-binding domain (34)

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Protein domain: T-cell transcription factor NFAT1 (NFATC), DNA-binding domain (9)

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Protein domain: T-cell transcription factor NFAT5 (TONEBP), DNA-binding domain (1)

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Family: STAT DNA-binding domain (4)

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Protein domain: STAT-1, DNA-binding domain (1)

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Fold: DNA-binding pseudobarrel domain (3)

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Superfamily: DNA-binding pseudobarrel domain (3)

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Family: B3 DNA binding domain (2)

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Protein domain: DNA-binding protein RAV1 (1)

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Fold: HSP40/DnaJ peptide-binding domain (6)

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Superfamily: HSP40/DnaJ peptide-binding domain (6)

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Family: HSP40/DnaJ peptide-binding domain (3)

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Fold: Immunoglobulin-like beta-sandwich (7299)

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Superfamily: E set domains (509)

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Family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain (56)

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Protein domain: DNA-binding protein LAG-1 (CSL) (4)

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Fold: OB-fold (1179)

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Superfamily: Nucleic acid-binding proteins (590)

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Family: Cold shock DNA-binding domain-like (310)

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Family: Phage ssDNA-binding proteins (24)

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Family: Single strand DNA-binding domain, SSB (96)

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Protein domain: Archaeal ssDNA-binding protein (1)

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Protein domain: CDC13 ssDNA-binding domain (2)

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Protein domain: ssDNA-binding protein (13)

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Fold: SH3-like barrel (1035)

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Superfamily: Chromo domain-like (82)

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Family: Histone-like proteins from archaea (26)

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Protein domain: DNA-binding protein (15)

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Superfamily: DNA-binding domain of retroviral integrase (9)

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Family: DNA-binding domain of retroviral integrase (7)

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Protein domain: DNA-binding domain of retroviral integrase (7)

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Class: Alpha and beta proteins (a+b) (23004)

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Fold: DNA-binding domain (16)

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Superfamily: DNA-binding domain (16)

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Family: DNA-binding domain from tn916 integrase (4)

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Protein domain: DNA-binding domain from tn916 integrase (4)

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Fold: DNA-binding domain of intron-encoded endonucleases (3)

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Superfamily: DNA-binding domain of intron-encoded endonucleases (3)

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Family: DNA-binding domain of intron-encoded endonucleases (3)

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Protein domain: DNA-binding domain of intron endonuclease I-TevI (2)

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Fold: DNA-binding domain of Mlu1-box binding protein MBP1 (3)

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Superfamily: DNA-binding domain of Mlu1-box binding protein MBP1 (3)

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Family: DNA-binding domain of Mlu1-box binding protein MBP1 (3)

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Protein domain: DNA-binding domain of Mlu1-box binding protein MBP1 (3)

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Fold: DNA-binding protein Tfx (1)

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Superfamily: DNA-binding protein Tfx (1)

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Family: DNA-binding protein Tfx (1)

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Protein domain: DNA-binding protein Tfx (1)

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Fold: Ferredoxin-like (1795)

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Superfamily: RNA-binding domain, RBD (289)

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Family: Canonical RBD (214)

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Protein domain: TAR DNA-binding protein 43, TDP-43 (2)

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Superfamily: Viral DNA-binding domain (18)

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Family: Viral DNA-binding domain (18)

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Fold: GYF/BRK domain-like (9)

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Superfamily: BRK domain-like (5)

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Family: BRK domain-like (5)

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Protein domain: Chromodomain-helicase-DNA-binding protein 7, CHD7 (3)

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Protein domain: Chromodomain-helicase-dna-binding protein 8, CHD8 (2)

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Fold: IF3-like (127)

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Superfamily: AlbA-like (17)

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Family: DNA-binding protein AlbA (13)

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Protein domain: DNA-binding protein AlbA (8)

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Fold: MotA C-terminal domain-like (1)

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Superfamily: DNA-binding C-terminal domain of the transcription factor MotA (1)

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Family: DNA-binding C-terminal domain of the transcription factor MotA (1)

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Protein domain: DNA-binding C-terminal domain of the transcription factor MotA (1)

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Fold: Origin of replication-binding domain, RBD-like (33)

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Superfamily: Origin of replication-binding domain, RBD-like (33)

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Family: DNA-binding domain of REP protein (2)

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Protein domain: DNA-binding domain of REP protein (2)

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Family: The origin DNA-binding domain of SV40 T-antigen (15)

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Protein domain: The origin DNA-binding domain of SV40 T-antigen (14)

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Fold: POZ domain (79)

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Superfamily: POZ domain (79)

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Family: BTB/POZ domain (43)

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Protein domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D (2)

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Fold: Replication modulator SeqA, C-terminal DNA-binding domain (4)

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Superfamily: Replication modulator SeqA, C-terminal DNA-binding domain (4)

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Family: Replication modulator SeqA, C-terminal DNA-binding domain (4)

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Protein domain: Replication modulator SeqA, C-terminal DNA-binding domain (3)

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Fold: ssDNA-binding transcriptional regulator domain (23)

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Superfamily: ssDNA-binding transcriptional regulator domain (23)

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Class: Alpha and beta proteins (a/b) (23833)

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Fold: BRCT domain (29)

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Superfamily: BRCT domain (29)

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Family: DNA topoisomerase II binding protein 1, TopBP1 (1)

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Protein domain: DNA topoisomerase II binding protein 1, TopBP1 (1)

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Fold: Flavodoxin-like (1057)

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Superfamily: CheY-like (258)

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Family: CheY-related (166)

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Protein domain: DNA-binding response regulator MicA, N-terminal domain (11)

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Class: Multi-domain proteins (alpha and beta) (2421)

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Fold: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment (16)

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Superfamily: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment (16)

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Family: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment (16)

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Protein domain: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment (16)

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Fold: Viral ssDNA binding protein (1)

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Superfamily: Viral ssDNA binding protein (1)

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Family: Viral ssDNA binding protein (1)

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Class: Peptides (792)

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Fold: DNA-binding domains of HMG-I(Y) (4)

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Superfamily: DNA-binding domains of HMG-I(Y) (4)

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Family: DNA-binding domains of HMG-I(Y) (4)

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Protein domain: DNA-binding domains of HMG-I(Y) (4)

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Class: Small proteins (3458)

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Fold: Cysteine-rich DNA binding domain, (DM domain) (1)

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Superfamily: Cysteine-rich DNA binding domain, (DM domain) (1)

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Family: Cysteine-rich DNA binding domain, (DM domain) (1)

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Fold: Glucocorticoid receptor-like (DNA-binding domain) (292)

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Superfamily: Glucocorticoid receptor-like (DNA-binding domain) (292)

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Family: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain (2)

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Protein domain: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain (2)

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Family: Nuclear receptor (49)

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Protein domain: Ecdysone receptor DNA-binding domain (2)

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Protein domain: Estrogen receptor DNA-binding domain (2)

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Protein domain: Glucocorticoid receptor DNA-binding domain (11)

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Protein domain: Orphan nuclear receptor NGFI-B DNA-binding domain (1)

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Protein domain: Orphan nuclear receptor reverb DNA-binding domain (3)

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Protein domain: Retinoic acid receptor DNA-binding domain (2)

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Protein domain: Retinoid X receptor (RXR-alpha) DNA-binding domain (5)

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Protein domain: Steroid hormone receptor Err2 DNA-binding domain (1)

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Protein domain: Thyroid hormone receptor (TR-beta) DNA-binding domain (1)

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Protein domain: Vitamin D3 receptor, VDR, DNA-binding domain (4)

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Fold: SBT domain (3)

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Superfamily: SBT domain (3)

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Family: SBT domain (3)

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Protein domain: Squamosa promoter binding protein-like 4, DNA-binding domain (1)

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Protein domain: Squamosa promoter binding protein-like 7, DNA-binding domain (1)

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Protein domain: Squamosa-promoter binding-like protein 12, DNA-binding domain (1)

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Fold: WRKY DNA-binding domain (3)

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Superfamily: WRKY DNA-binding domain (3)

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Family: WRKY DNA-binding domain (2)

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Protein domain: WRKY DNA-binding protein 4 (2)

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Fold: Zn-binding domains of ADDBP (8)

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Superfamily: Zn-binding domains of ADDBP (8)

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Family: Zn-binding domains of ADDBP (8)

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Protein domain: First Zn-domain of early E2A DNA-binding protein, ADDBP (4)

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Protein domain: Second Zn-domain of early E2A DNA-binding protein, ADDBP (4)

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Fold: Zn2/Cys6 DNA-binding domain (15)

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Superfamily: Zn2/Cys6 DNA-binding domain (15)

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Family: Zn2/Cys6 DNA-binding domain (15)

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Protein domain: Ethanol regulon transcriptional activator ALCR DNA-binding domain (4)