Chain A from PDB Type:PROTEIN Length:221
aligned with CMA1_HUMAN | P23946 from UniProtKB/Swiss-Prot Length:247
Alignment length:226
31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241
CMA1_HUMAN 22 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQILQAN 247
SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..............eeeeeee......eeeeeeeee..eeeehhhhh..eeeeee............eeeeeeeeee.............eeeee................-----.....eeeeee..............eeeeeeeehhhhhh.........eeee................eeee..eeeeeeee........eeeeehhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------R-------------------R-------------------------------H----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) TRYPSIN_DOM PDB: A:1-224 UniProt: 22-245 -- PROSITE (1)
PROSITE (2) ----------------------------------------TRYPSI---------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER --------------------------------------- PROSITE (2)
Transcript 1 (1) Exon 1.2a PDB: A:1-49 UniProt: 20-70 ---------------------------------------------Exon 1.4a PDB: A:95-179 (gaps) UniProt: 116-200 Exon 1.5b PDB: A:180-226 UniProt: 201-247 Transcript 1 (1)
Transcript 1 (2) ------------------------------------------------Exon 1.3 PDB: A:49-94 UniProt: 70-115 ------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
4AG1 A 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFP-----VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQILQAN 226
10 20 30 40 50 60 70 80 90 100 110| |120 130 140 150 160 170 180 190 200 210 220
111 117
Chain C from PDB Type:PROTEIN Length:63
SCOP domains --------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeee..................eeeeee.....eeeeee.....eeeee...eee...... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------- Transcript
4AG1 C 2 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQG 64
11 21 31 41 51 61
| Legend: |
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→ Mismatch |
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(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
