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(by PDB/NDB code)           

 Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:207
 aligned with Q5V4K4_HALMA | Q5V4K4 from UniProtKB/TrEMBL  Length:232

    Alignment length:207
                             1                                                                                                                                                                                                             
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       
         Q5V4K4_HALMA     - -MPLLIDIRKLTLITRLIQDGAEQVADSLATLAGVDAAVEIKSLSFVQPEDIATEMGGGTIYSARVRLTEPPYGVFLMTFETETAAEIAELMTGSSVEDGFTQLHESALQEMCNILTSGFIDGIANTLNATINMGTPTVVQDDATEIADKALSHVRRDSLTIVLDSLVDIKESDVAFSLRIFLIPDPGSFVHLIDQLDYDTDRETHI 206
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee...hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhhhhhh....eeeeeee.......eeeeeehhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeehhhhhhhhhh........eeeeeeeeee.....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3QTA A   0 GmPLLIDIRKLTLITRLIQDGAEQVADSLATLAGVDAAVEIKSLSFVQPEDIATEmGGGTIYSARVRLTEPPYGVFLmTFETETAAEIAELmTGSSVEDGFTQLHESALQEmCNILTSGFIDGIANTLNATINmGTPTVVQDDATEIADKALSHVRRDSLTIVLDSLVDIKESDVAFSLRIFLIPDPGSFVHLIDQLDYDTDRETHI 206
                             |       9        19        29        39        49     |  59        69       |79        89 |      99       109 |     119       129   |   139       149       159       169       179       189       199       
                             |                                                    55-MSE                77-MSE        91-MSE             111-MSE               133-MSE                                                                     
                             1-MSE                                                                                                                                                                                                         

Chain B from PDB  Type:PROTEIN  Length:199
 aligned with Q5V4K4_HALMA | Q5V4K4 from UniProtKB/TrEMBL  Length:232

    Alignment length:199
                             1                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189         
         Q5V4K4_HALMA     - -MPLLIDIRKLTLITRLIQDGAEQVADSLATLAGVDAAVEIKSLSFVQPEDIATEMGGGTIYSARVRLTEPPYGVFLMTFETETAAEIAELMTGSSVEDGFTQLHESALQEMCNILTSGFIDGIANTLNATINMGTPTVVQDDATEIADKALSHVRRDSLTIVLDSLVDIKESDVAFSLRIFLIPDPGSFVHLIDQLDY 198
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------CheC-3qtaB01 B:103-139               ----------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------CheC-3qtaB02 B:103-139               ----------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ....eee..hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhhhhhhh..eeeeeeeee.....eeeeeeehhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeehhhhhhhhh........eeeeeeeeee.....eeeeeeeee.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3QTA B   0 GmPLLIDIRKLTLITRLIQDGAEQVADSLATLAGVDAAVEIKSLSFVQPEDIATEmGGGTIYSARVRLTEPPYGVFLmTFETETAAEIAELmTGSSVEDGFTQLHESALQEmCNILTSGFIDGIANTLNATINmGTPTVVQDDATEIADKALSHVRRDSLTIVLDSLVDIKESDVAFSLRIFLIPDPGSFVHLIDQLDY 198
                             |       9        19        29        39        49     |  59        69       |79        89 |      99       109 |     119       129   |   139       149       159       169       179       189         
                             1-MSE                                                55-MSE                77-MSE        91-MSE             111-MSE               133-MSE                                                             

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'