Reformat:	Number of residues per line =  ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete  aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:104
 aligned with PRIO_HUMAN | P04156 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:104
                                   134       144       154       164       174       184       194       204       214       224    
           PRIO_HUMAN   125 LGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQR 228
               SCOP domains d1qm1a_ A: Prion protein domain                                                                          SCOP domains
               CATH domains 1qm1A00 A:125-228 Major Prion Protein                                                                    CATH domains
               Pfam domains ---------Prion-1qm1A01 A:134-228                                                                         Pfam domains
         Sec.struct. author ...eeee............hhhhhhhhhhh......eeee........hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) --V-V-V---------------------------------------S------N-I--A---RK-------K-S-K-NI----H-IQP----R-K--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------R---------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------PRION_2            ---------- PROSITE
               Transcript 1 Exon 1.2e  PDB: A:125-228 UniProt: 1-257 [INCOMPLETE]                                                    Transcript 1
                 1QM1 A 125 LGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQR 228
                                   134       144       154       164       174       184       194       204       214       224    

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'