10 20 30 40 50 60 70 80 8TFV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIMICROBIAL 24-NOV-98 8TFV
TITLE INSECT DEFENSE PEPTIDE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (THANATIN); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DISULFIDE BRIDGE BETWEEN C 11 AND C 18
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. SOURCE 4 THE SEQUENCE OF THIS PEPTIDE IS NATURALLY FOUND IN THE SOURCE 5 HAEMOLYMPH TISSUE OF PODISUS MACULIVENTRIS.
KEYWDS BACTERICIDAL, FUNGICIDAL, ANTIMICROBIAL
EXPDTA SOLUTION NMR
NUMMDL 18
AUTHOR N.MANDARD,P.SODANO,H.LABBE,J.M.BONMATIN,P.BULET,C.HETRU, AUTHOR 2 M.PTAK,F.VOVELLE
REVDAT 3 24-FEB-09 8TFV 1 VERSN REVDAT 2 15-DEC-99 8TFV 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 02-DEC-98 8TFV 0
JRNL AUTH N.MANDARD,P.SODANO,H.LABBE,J.M.BONMATIN,P.BULET, JRNL AUTH 2 C.HETRU,M.PTAK,F.VOVELLE JRNL TITL SOLUTION STRUCTURE OF THANATIN, A POTENT JRNL TITL 2 BACTERICIDAL AND FUNGICIDAL INSECT PEPTIDE, JRNL TITL 3 DETERMINED FROM PROTON TWO-DIMENSIONAL NUCLEAR JRNL TITL 4 MAGNETIC RESONANCE DATA. JRNL REF EUR.J.BIOCHEM. V. 256 404 1998 JRNL REFN ISSN 0014-2956 JRNL PMID 9760181 JRNL DOI 10.1046/J.1432-1327.1998.2560404.X
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DIANA SOFTWARE BY P.GUNTERT WAS ALSO REMARK 3 USED (MORE REFINEMENT DETAILS CAN BE FOUND IN THE JRNL REMARK 3 CITATION ABOVE)
REMARK 4 REMARK 4 8TFV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-NOV-98. REMARK 100 THE RCSB ID CODE IS RCSB000143.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 3.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, COSY, TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIANA, XPLOR REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING,ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TWO DIMENSIONAL NMR REMARK 210 SPECTROSCOPY ON 1H
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 CYS A 11 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 1 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 1 ARG A 14 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 3 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 3 ARG A 20 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 5 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 5 CYS A 18 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 6 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 6 ARG A 20 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 8 CYS A 11 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 8 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 8 CYS A 18 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 8 ARG A 20 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 8 ARG A 20 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 9 ARG A 14 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 10 ARG A 20 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 11 CYS A 11 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 11 CYS A 18 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 12 ARG A 20 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 14 ARG A 14 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 14 ARG A 20 NE - CZ - NH1 ANGL. DEV. = -5.6 DEGREES REMARK 500 15 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 16 ARG A 20 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 17 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 18 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 18 CYS A 18 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 18 ARG A 20 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -71.11 -114.11 REMARK 500 1 ASN A 12 70.15 -108.24 REMARK 500 2 SER A 2 -75.79 -99.35 REMARK 500 2 PRO A 7 -168.54 -75.95 REMARK 500 2 ASN A 12 67.62 -101.88 REMARK 500 2 ARG A 13 -39.61 -35.36 REMARK 500 3 SER A 2 171.51 78.89 REMARK 500 3 LYS A 3 165.15 72.43 REMARK 500 3 VAL A 6 89.02 -16.52 REMARK 500 3 ASN A 12 66.07 -111.66 REMARK 500 4 PRO A 7 -170.31 -56.62 REMARK 500 4 ASN A 12 56.84 -102.33 REMARK 500 4 ARG A 13 -35.53 -36.08 REMARK 500 5 SER A 2 -56.25 -122.16 REMARK 500 5 PRO A 5 -179.89 -65.10 REMARK 500 5 PRO A 7 170.74 -51.46 REMARK 500 5 ASN A 12 69.40 -105.78 REMARK 500 6 ASN A 12 63.78 -101.45 REMARK 500 6 GLN A 19 177.58 179.31 REMARK 500 7 PRO A 5 47.83 -74.46 REMARK 500 8 PRO A 5 69.33 -68.24 REMARK 500 8 PRO A 7 -168.84 -76.74 REMARK 500 8 ASN A 12 72.02 -100.22 REMARK 500 8 ARG A 13 -39.93 -36.43 REMARK 500 9 SER A 2 63.19 -112.19 REMARK 500 9 PRO A 5 72.56 -66.47 REMARK 500 9 PRO A 7 -168.63 -58.49 REMARK 500 9 ASN A 12 57.40 -107.43 REMARK 500 9 GLN A 19 -175.12 -175.31 REMARK 500 10 SER A 2 -47.53 -29.43 REMARK 500 10 PRO A 5 73.72 -69.21 REMARK 500 10 ASN A 12 64.03 -105.47 REMARK 500 11 SER A 2 -161.39 -117.06 REMARK 500 11 ILE A 8 140.89 -37.18 REMARK 500 11 ASN A 12 71.17 -104.52 REMARK 500 12 SER A 2 60.67 0.54 REMARK 500 12 PRO A 5 70.30 -44.55 REMARK 500 12 PRO A 7 -158.22 -81.57 REMARK 500 13 SER A 2 57.01 -117.70 REMARK 500 13 ASN A 12 55.13 -100.57 REMARK 500 13 GLN A 19 -169.07 -168.30 REMARK 500 14 SER A 2 -66.73 -120.64 REMARK 500 15 SER A 2 -74.96 -118.89 REMARK 500 15 PRO A 5 73.79 -64.38 REMARK 500 15 ASN A 12 53.87 -92.85 REMARK 500 15 ARG A 13 -49.01 -27.99 REMARK 500 16 SER A 2 -59.21 -123.35 REMARK 500 16 PRO A 5 81.65 -68.46 REMARK 500 16 ASN A 12 76.80 -102.26 REMARK 500 17 ASN A 12 62.80 -105.31 REMARK 500 18 ASN A 12 69.23 -105.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 13 0.31 SIDE_CHAIN REMARK 500 1 ARG A 14 0.29 SIDE_CHAIN REMARK 500 1 ARG A 20 0.31 SIDE_CHAIN REMARK 500 2 ARG A 13 0.32 SIDE_CHAIN REMARK 500 2 ARG A 14 0.32 SIDE_CHAIN REMARK 500 2 ARG A 20 0.12 SIDE_CHAIN REMARK 500 3 ARG A 13 0.30 SIDE_CHAIN REMARK 500 3 ARG A 14 0.32 SIDE_CHAIN REMARK 500 3 ARG A 20 0.16 SIDE_CHAIN REMARK 500 4 ARG A 13 0.32 SIDE_CHAIN REMARK 500 4 ARG A 14 0.21 SIDE_CHAIN REMARK 500 4 ARG A 20 0.18 SIDE_CHAIN REMARK 500 5 ARG A 13 0.31 SIDE_CHAIN REMARK 500 5 ARG A 14 0.27 SIDE_CHAIN REMARK 500 5 ARG A 20 0.13 SIDE_CHAIN REMARK 500 6 ARG A 13 0.31 SIDE_CHAIN REMARK 500 6 ARG A 14 0.32 SIDE_CHAIN REMARK 500 6 ARG A 20 0.29 SIDE_CHAIN REMARK 500 7 ARG A 13 0.32 SIDE_CHAIN REMARK 500 7 ARG A 14 0.30 SIDE_CHAIN REMARK 500 7 ARG A 20 0.30 SIDE_CHAIN REMARK 500 8 ARG A 13 0.31 SIDE_CHAIN REMARK 500 8 ARG A 14 0.31 SIDE_CHAIN REMARK 500 8 ARG A 20 0.21 SIDE_CHAIN REMARK 500 9 ARG A 13 0.31 SIDE_CHAIN REMARK 500 9 ARG A 14 0.29 SIDE_CHAIN REMARK 500 9 ARG A 20 0.28 SIDE_CHAIN REMARK 500 10 ARG A 13 0.32 SIDE_CHAIN REMARK 500 10 ARG A 14 0.31 SIDE_CHAIN REMARK 500 10 ARG A 20 0.31 SIDE_CHAIN REMARK 500 11 ARG A 13 0.31 SIDE_CHAIN REMARK 500 11 ARG A 14 0.31 SIDE_CHAIN REMARK 500 11 ARG A 20 0.32 SIDE_CHAIN REMARK 500 12 ARG A 13 0.31 SIDE_CHAIN REMARK 500 12 ARG A 14 0.32 SIDE_CHAIN REMARK 500 12 ARG A 20 0.30 SIDE_CHAIN REMARK 500 13 ARG A 13 0.28 SIDE_CHAIN REMARK 500 13 ARG A 14 0.22 SIDE_CHAIN REMARK 500 13 ARG A 20 0.29 SIDE_CHAIN REMARK 500 14 ARG A 13 0.31 SIDE_CHAIN REMARK 500 14 ARG A 14 0.31 SIDE_CHAIN REMARK 500 14 ARG A 20 0.30 SIDE_CHAIN REMARK 500 15 ARG A 13 0.22 SIDE_CHAIN REMARK 500 15 ARG A 14 0.28 SIDE_CHAIN REMARK 500 15 ARG A 20 0.33 SIDE_CHAIN REMARK 500 16 ARG A 13 0.31 SIDE_CHAIN REMARK 500 16 ARG A 14 0.32 SIDE_CHAIN REMARK 500 16 ARG A 20 0.29 SIDE_CHAIN REMARK 500 17 ARG A 13 0.30 SIDE_CHAIN REMARK 500 17 ARG A 14 0.28 SIDE_CHAIN REMARK 500 17 ARG A 20 0.32 SIDE_CHAIN REMARK 500 18 ARG A 13 0.30 SIDE_CHAIN REMARK 500 18 ARG A 14 0.32 SIDE_CHAIN REMARK 500 18 ARG A 20 0.29 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 8TFV A 1 21 UNP P55788 THAN_PODMA 1 21
SEQRES 1 A 21 GLY SER LYS LYS PRO VAL PRO ILE ILE TYR CYS ASN ARG SEQRES 2 A 21 ARG THR GLY LYS CYS GLN ARG MET
HELIX 1 1 ARG A 13 THR A 15 5 3
SHEET 1 A 2 ILE A 8 ASN A 12 0 SHEET 2 A 2 LYS A 17 MET A 21 -1 N MET A 21 O ILE A 8
SSBOND 1 CYS A 11 CYS A 18 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000