8DRH - Header Asymmetric Unit

HEADER DNA-RNA HYBRID 13-OCT-97 8DRH

TITLE HIGH RESOLUTION NMR STRUCTURE OF THE D(GCGTCAGG)R(CCUGACGC) TITLE 2 HYBRID, MINIMIZED AVERAGE STRUCTURE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*GP*TP*CP*AP*GP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'-R(*CP*CP*UP*GP*AP*CP*GP*C)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES

KEYWDS OLIGONUCLEOTIDE, DNA/RNA HYBRID, DEOXYRIBONUCLEIC KEYWDS 2 ACID/RIBONUCLEIC ACID, DNA-RNA HYBRID

EXPDTA SOLUTION NMR

AUTHOR M.BACHELIN,G.HESSLER,G.KURZ,J.G.HACIA,P.B.DERVAN,H.KESSLER

REVDAT 2 24-FEB-09 8DRH 1 VERSN REVDAT 1 27-MAY-98 8DRH 0

JRNL AUTH M.BACHELIN,G.HESSLER,G.KURZ,J.G.HACIA,P.B.DERVAN, JRNL AUTH 2 H.KESSLER JRNL TITL STRUCTURE OF A STEREOREGULAR PHOSPHOROTHIOATE JRNL TITL 2 DNA/RNA DUPLEX JRNL REF NAT.STRUCT.BIOL. V. 5 271 1998 JRNL REFN ISSN 1072-8368 JRNL PMID 9546216 JRNL DOI 10.1038/NSB0498-271

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.BACHELIN REMARK 1 REF THESIS 1997 REMARK 1 PUBL MUNCHEN : TECHNISCHE UNIVERSITAT MUNCHEN (THESIS) REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH G.KURZ REMARK 1 REF THESIS 1995 REMARK 1 PUBL MUNCHEN : TECHNISCHE UNIVERSITAT MUNCHEN (THESIS) REMARK 1 REFN

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 2.97 REMARK 3 AUTHORS : MSI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 8DRH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, P.E.COSY, TOCSY, P-H REMARK 210 COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX600, DMX600, AMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : BRUKER UXNMR UXNMR, TRIAD REMARK 210 SYBYL SYBYL, MARDIGRAS, MSI REMARK 210 INSIGHT II II REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : AVERAGE OF ALL STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 1 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG A 3 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG A 7 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG A 8 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8PSH RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE

DBREF 8DRH A 1 8 PDB 8DRH 8DRH 1 8 DBREF 8DRH B 9 16 PDB 8DRH 8DRH 9 16

SEQRES 1 A 8 DG DC DG DT DC DA DG DG SEQRES 1 B 8 C C U G A C G C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000