10 20 30 40 50 60 70 80 830C - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER MATRIX METALLOPROTEASE 06-AUG-98 830C
TITLE COLLAGENASE-3 (MMP-13) COMPLEXED TO A SULPHONE-BASED TITLE 2 HYDROXAMIC ACID
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MMP-13; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: MMP-13; COMPND 6 EC: 3.4.24.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: CATALYTIC DOMAIN IS COMPLEXED WITH A COMPND 9 DIPHENYL-ETHER, SULPHONE INHIBITOR
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 OTHER_DETAILS: HUMAN CDNA CONSTRUCT. CDNA CONSTRUCT OF SOURCE 8 PROCOLLAGENASE-3
KEYWDS MATRIX METALLOPROTEASE
EXPDTA X-RAY DIFFRACTION
AUTHOR B.LOVEJOY,A.WELCH,S.CARR,C.LUONG,C.BROKA,R.T.HENDRICKS, AUTHOR 2 J.CAMPBELL,K.WALKER,R.MARTIN,H.VAN WART,M.F.BROWNER
REVDAT 2 24-FEB-09 830C 1 VERSN REVDAT 1 06-AUG-99 830C 0
JRNL AUTH B.LOVEJOY,A.R.WELCH,S.CARR,C.LUONG,C.BROKA, JRNL AUTH 2 R.T.HENDRICKS,J.A.CAMPBELL,K.A.WALKER,R.MARTIN, JRNL AUTH 3 H.VAN WART,M.F.BROWNER JRNL TITL CRYSTAL STRUCTURES OF MMP-1 AND -13 REVEAL THE JRNL TITL 2 STRUCTURAL BASIS FOR SELECTIVITY OF COLLAGENASE JRNL TITL 3 INHIBITORS. JRNL REF NAT.STRUCT.BIOL. V. 6 217 1999 JRNL REFN ISSN 1072-8368 JRNL PMID 10074939 JRNL DOI 10.1038/6657
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 42846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.300 REMARK 3 FREE R VALUE TEST SET COUNT : 4387 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2923 REMARK 3 BIN R VALUE (WORKING SET) : 0.3347 REMARK 3 BIN FREE R VALUE : 0.3567 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 320 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 2.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.13 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.24 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INHIBITOR REFINED USING PARAMETERS REMARK 3 DERIVED FROM QUANTA
REMARK 4 REMARK 4 830C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : DEC-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: PDB ENTRY 1CGF REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.0
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.03600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.04900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.03600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.04900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 248 REMARK 465 LYS A 249 REMARK 465 SER A 250 REMARK 465 HIS A 251 REMARK 465 ASP B 270 REMARK 465 GLU B 271
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 253 CG SD CE
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 170 -130.31 44.88 REMARK 500 SER A 182 -164.40 64.36 REMARK 500 ASN A 194 -112.03 61.20 REMARK 500 SER A 210 -155.50 -132.18 REMARK 500 ASP A 231 -169.66 -102.01 REMARK 500 PRO A 242 16.84 -69.02 REMARK 500 LYS B 170 -133.58 43.49 REMARK 500 PHE B 175 44.72 -97.05 REMARK 500 SER B 182 -165.06 66.61 REMARK 500 ASN B 194 -128.49 60.41 REMARK 500 SER B 210 -128.71 -129.56 REMARK 500 PRO B 242 19.46 -66.04 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 293 DISTANCE = 5.13 ANGSTROMS REMARK 525 HOH A 297 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH B 306 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH A 317 DISTANCE = 8.52 ANGSTROMS REMARK 525 HOH B 328 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH A 331 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 342 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 344 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A 351 DISTANCE = 13.55 ANGSTROMS REMARK 525 HOH B 365 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH A 375 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH B 384 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A 385 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH A 390 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 391 DISTANCE = 7.97 ANGSTROMS REMARK 525 HOH B 395 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 400 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH A 406 DISTANCE = 5.43 ANGSTROMS REMARK 525 HOH A 411 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH B 414 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH A 418 DISTANCE = 7.02 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 272 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 HIS A 226 NE2 99.5 REMARK 620 3 HIS A 232 NE2 111.4 96.6 REMARK 620 4 RS1 A 1 O42 103.2 156.4 81.1 REMARK 620 5 RS1 A 1 O43 106.0 91.4 139.7 76.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 273 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 NE2 REMARK 620 2 ASP A 174 OD2 108.5 REMARK 620 3 HIS A 187 NE2 119.8 111.7 REMARK 620 4 HIS A 200 ND1 106.2 100.5 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 274 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 OD1 REMARK 620 2 GLY A 180 O 86.8 REMARK 620 3 SER A 182 O 83.7 88.7 REMARK 620 4 LEU A 184 O 96.8 176.3 91.5 REMARK 620 5 ASP A 202 OD2 96.7 91.9 179.3 87.9 REMARK 620 6 GLU A 205 OE2 170.4 91.3 86.8 85.1 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 272 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 222 NE2 REMARK 620 2 HIS B 226 NE2 102.3 REMARK 620 3 HIS B 232 NE2 105.9 92.0 REMARK 620 4 RS1 B 1 O42 107.9 149.4 84.2 REMARK 620 5 RS1 B 1 O43 106.6 90.6 146.0 76.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 273 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 172 NE2 REMARK 620 2 ASP B 174 OD2 110.6 REMARK 620 3 HIS B 187 NE2 115.2 111.4 REMARK 620 4 HIS B 200 ND1 111.2 97.7 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 274 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 179 OD1 REMARK 620 2 GLY B 180 O 90.1 REMARK 620 3 SER B 182 O 83.6 93.4 REMARK 620 4 LEU B 184 O 91.5 177.8 88.4 REMARK 620 5 ASP B 202 OD2 94.9 87.2 178.4 91.1 REMARK 620 6 GLU B 205 OE2 170.8 90.6 87.2 88.1 94.2 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 272 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 273 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 274 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 272 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 273 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 274 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RS1 A 1 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RS1 B 1
DBREF 830C A 104 271 UNP P45452 MMP13_HUMAN 104 271 DBREF 830C B 104 271 UNP P45452 MMP13_HUMAN 104 271
SEQRES 1 A 168 TYR ASN VAL PHE PRO ARG THR LEU LYS TRP SER LYS MET SEQRES 2 A 168 ASN LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP MET SEQRES 3 A 168 THR HIS SER GLU VAL GLU LYS ALA PHE LYS LYS ALA PHE SEQRES 4 A 168 LYS VAL TRP SER ASP VAL THR PRO LEU ASN PHE THR ARG SEQRES 5 A 168 LEU HIS ASP GLY ILE ALA ASP ILE MET ILE SER PHE GLY SEQRES 6 A 168 ILE LYS GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 A 168 SER GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO ASN SEQRES 8 A 168 TYR GLY GLY ASP ALA HIS PHE ASP ASP ASP GLU THR TRP SEQRES 9 A 168 THR SER SER SER LYS GLY TYR ASN LEU PHE LEU VAL ALA SEQRES 10 A 168 ALA HIS GLU PHE GLY HIS SER LEU GLY LEU ASP HIS SER SEQRES 11 A 168 LYS ASP PRO GLY ALA LEU MET PHE PRO ILE TYR THR TYR SEQRES 12 A 168 THR GLY LYS SER HIS PHE MET LEU PRO ASP ASP ASP VAL SEQRES 13 A 168 GLN GLY ILE GLN SER LEU TYR GLY PRO GLY ASP GLU SEQRES 1 B 168 TYR ASN VAL PHE PRO ARG THR LEU LYS TRP SER LYS MET SEQRES 2 B 168 ASN LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP MET SEQRES 3 B 168 THR HIS SER GLU VAL GLU LYS ALA PHE LYS LYS ALA PHE SEQRES 4 B 168 LYS VAL TRP SER ASP VAL THR PRO LEU ASN PHE THR ARG SEQRES 5 B 168 LEU HIS ASP GLY ILE ALA ASP ILE MET ILE SER PHE GLY SEQRES 6 B 168 ILE LYS GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 B 168 SER GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO ASN SEQRES 8 B 168 TYR GLY GLY ASP ALA HIS PHE ASP ASP ASP GLU THR TRP SEQRES 9 B 168 THR SER SER SER LYS GLY TYR ASN LEU PHE LEU VAL ALA SEQRES 10 B 168 ALA HIS GLU PHE GLY HIS SER LEU GLY LEU ASP HIS SER SEQRES 11 B 168 LYS ASP PRO GLY ALA LEU MET PHE PRO ILE TYR THR TYR SEQRES 12 B 168 THR GLY LYS SER HIS PHE MET LEU PRO ASP ASP ASP VAL SEQRES 13 B 168 GLN GLY ILE GLN SER LEU TYR GLY PRO GLY ASP GLU
HET ZN A 272 1 HET ZN A 273 1 HET CA A 274 1 HET ZN B 272 1 HET ZN B 273 1 HET CA B 274 1 HET RS1 A 1 48 HET RS1 B 1 48
HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM RS1 4-[4-(4-CHLORO-PHENOXY)-BENZENESULFONYLMETHYL]- HETNAM 2 RS1 TETRAHYDRO-PYRAN-4-CARBOXYLIC ACID HYDROXYAMIDE
FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CA 2(CA 2+) FORMUL 9 RS1 2(C19 H20 CL N O6 S) FORMUL 11 HOH *367(H2 O)
HELIX 1 1 HIS A 131 VAL A 148 1 18 HELIX 2 2 LEU A 216 SER A 227 1 12 HELIX 3 3 ASP A 256 TYR A 266 1 11 HELIX 4 4 HIS B 131 VAL B 148 1 18 HELIX 5 5 LEU B 216 SER B 227 1 12 HELIX 6 6 ASP B 256 TYR B 266 1 11
SHEET 1 AA 5 ASN A 152 LEU A 156 0 SHEET 2 AA 5 ASN A 117 ILE A 122 1 N LEU A 118 O ASN A 152 SHEET 3 AA 5 ILE A 163 GLY A 168 1 N ILE A 163 O ARG A 121 SHEET 4 AA 5 ALA A 199 ASP A 202 1 N ALA A 199 O SER A 166 SHEET 5 AA 5 ALA A 186 ALA A 188 -1 N HIS A 187 O HIS A 200 SHEET 1 AB 5 ASN A 152 ARG A 155 0 SHEET 2 AB 5 ASN A 117 ILE A 122 1 N LEU A 118 O ASN A 152 SHEET 3 AB 5 ILE A 163 GLY A 168 1 N ILE A 163 O ARG A 121 SHEET 4 AB 5 ALA A 199 ASP A 202 1 N ALA A 199 O SER A 166 SHEET 5 AB 5 ALA A 186 ALA A 188 -1 N HIS A 187 O HIS A 200 SHEET 1 BA 5 ASN B 152 LEU B 156 0 SHEET 2 BA 5 ASN B 117 ILE B 122 1 N LEU B 118 O ASN B 152 SHEET 3 BA 5 ILE B 163 GLY B 168 1 N ILE B 163 O ARG B 121 SHEET 4 BA 5 ALA B 199 ASP B 202 1 N ALA B 199 O SER B 166 SHEET 5 BA 5 ALA B 186 ALA B 188 -1 N HIS B 187 O HIS B 200 SHEET 1 BB 5 ASN B 152 ARG B 155 0 SHEET 2 BB 5 ASN B 117 ILE B 122 1 N LEU B 118 O ASN B 152 SHEET 3 BB 5 ILE B 163 GLY B 168 1 N ILE B 163 O ARG B 121 SHEET 4 BB 5 ALA B 199 ASP B 202 1 N ALA B 199 O SER B 166 SHEET 5 BB 5 ALA B 186 ALA B 188 -1 N HIS B 187 O HIS B 200
LINK ZN ZN A 272 NE2 HIS A 222 1555 1555 1.89 LINK ZN ZN A 272 NE2 HIS A 226 1555 1555 1.99 LINK ZN ZN A 272 NE2 HIS A 232 1555 1555 2.05 LINK ZN ZN A 272 O42 RS1 A 1 1555 1555 2.05 LINK ZN ZN A 272 O43 RS1 A 1 1555 1555 1.85 LINK ZN ZN A 273 NE2 HIS A 172 1555 1555 1.92 LINK ZN ZN A 273 OD2 ASP A 174 1555 1555 1.74 LINK ZN ZN A 273 NE2 HIS A 187 1555 1555 1.86 LINK ZN ZN A 273 ND1 HIS A 200 1555 1555 1.95 LINK CA CA A 274 OD1 ASP A 179 1555 1555 2.21 LINK CA CA A 274 O GLY A 180 1555 1555 2.20 LINK CA CA A 274 O SER A 182 1555 1555 2.11 LINK CA CA A 274 O LEU A 184 1555 1555 2.31 LINK CA CA A 274 OD2 ASP A 202 1555 1555 2.25 LINK CA CA A 274 OE2 GLU A 205 1555 1555 1.98 LINK ZN ZN B 272 NE2 HIS B 222 1555 1555 1.92 LINK ZN ZN B 272 NE2 HIS B 226 1555 1555 2.06 LINK ZN ZN B 272 NE2 HIS B 232 1555 1555 1.96 LINK ZN ZN B 272 O42 RS1 B 1 1555 1555 1.87 LINK ZN ZN B 272 O43 RS1 B 1 1555 1555 1.87 LINK ZN ZN B 273 NE2 HIS B 172 1555 1555 1.91 LINK ZN ZN B 273 OD2 ASP B 174 1555 1555 1.75 LINK ZN ZN B 273 NE2 HIS B 187 1555 1555 1.97 LINK ZN ZN B 273 ND1 HIS B 200 1555 1555 1.91 LINK CA CA B 274 OD1 ASP B 179 1555 1555 2.22 LINK CA CA B 274 O GLY B 180 1555 1555 2.19 LINK CA CA B 274 O SER B 182 1555 1555 2.24 LINK CA CA B 274 O LEU B 184 1555 1555 2.28 LINK CA CA B 274 OD2 ASP B 202 1555 1555 2.24 LINK CA CA B 274 OE2 GLU B 205 1555 1555 1.87
SITE 1 AC1 4 RS1 A 1 HIS A 222 HIS A 226 HIS A 232 SITE 1 AC2 4 HIS A 172 ASP A 174 HIS A 187 HIS A 200 SITE 1 AC3 6 ASP A 179 GLY A 180 SER A 182 LEU A 184 SITE 2 AC3 6 ASP A 202 GLU A 205 SITE 1 AC4 4 RS1 B 1 HIS B 222 HIS B 226 HIS B 232 SITE 1 AC5 4 HIS B 172 ASP B 174 HIS B 187 HIS B 200 SITE 1 AC6 6 ASP B 179 GLY B 180 SER B 182 LEU B 184 SITE 2 AC6 6 ASP B 202 GLU B 205 SITE 1 AC7 13 LEU A 185 ALA A 186 HIS A 222 GLU A 223 SITE 2 AC7 13 HIS A 226 HIS A 232 LEU A 239 PHE A 241 SITE 3 AC7 13 PRO A 242 ILE A 243 TYR A 244 ZN A 272 SITE 4 AC7 13 HOH A 443 SITE 1 AC8 12 LEU B 185 ALA B 186 HIS B 222 GLU B 223 SITE 2 AC8 12 HIS B 226 HIS B 232 LEU B 239 PHE B 241 SITE 3 AC8 12 PRO B 242 ILE B 243 ZN B 272 HOH B 415
CRYST1 136.072 36.098 96.368 90.00 131.06 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007349 0.000000 0.006402 0.00000
SCALE2 0.000000 0.027702 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013762 0.00000